Daniel P. Miranker

Rui Mao, Willard L. Miranker, Daniel P. Miranker: Pivot selection: Dimension reduction for distance-based indexing. J. Discrete Algorithms 13: 32-46 (2012)

Marcelo Arenas, Claudio Gutierrez, Daniel P. Miranker, Jorge Pérez, Juan Sequeda: Querying Semantic Data on the Web? SIGMOD Record 41(4): 6-17 (2012)

David P. Gardner, Weijia Xu, Daniel P. Miranker, Stuart Ozer, Jamie J. Cannone, Robin Ray Gutell: An accurate scalable template-based alignment algorithm. BIBM 2012: 1-7

Juan Sequeda, Marcelo Arenas, Daniel P. Miranker: Ontology-Based Data Access Using Views. RR 2012: 262-265

Aibo Tian, Juan Sequeda, Daniel P. Miranker: Queries, the Missing Link in Automatic Data Integration. International Semantic Web Conference (Posters & Demos) 2012

Juan Sequeda, Marcelo Arenas, Daniel P. Miranker: On directly mapping relational databases to RDF and OWL. WWW 2012: 649-658

Juan Sequeda, Marcelo Arenas, Daniel P. Miranker: On Directly Mapping Relational Databases to RDF and OWL (Extended Version). CoRR abs/1202.3667 (2012)

Juan Sequeda, Syed Hamid Tirmizi, Óscar Corcho, Daniel P. Miranker: Survey of directly mapping SQL databases to the Semantic Web. Knowledge Eng. Review 26(4): 445-486 (2011)

Yanan Jiang, Weijia Xu, Lee Parnell Thompson, Robin Ray Gutell, Daniel P. Miranker: R-PASS: A Fast Structure-Based RNA Sequence Alignment Algorithm. BIBM 2011: 618-622

Rui Mao, Willard L. Miranker, Daniel P. Miranker: Dimension reduction for distance-based indexing. SISAP 2010: 25-32

Rui Mao, Smriti R. Ramakrishnan, Glen Nuckolls, Daniel P. Miranker: An inverted index for mass spectra similarity query and comparison with a metric-space method: case study. SISAP 2010: 93-99

Smriti R. Ramakrishnan, Christine Vogel, John T. Prince, Rong Wang, Zhihua Li, Luiz O. Penalva, Margaret Myers, Edward M. Marcotte, Daniel P. Miranker: Integrating shotgun proteomics and mRNA expression data to improve protein identification. Bioinformatics 25(11): 1397-1403 (2009)

Smriti R. Ramakrishnan, Christine Vogel, Taejoon Kwon, Luiz O. Penalva, Edward M. Marcotte, Daniel P. Miranker: Mining gene functional networks to improve mass-spectrometry-based protein identification. Bioinformatics 25(22): 2955-2961 (2009)

Syed Hamid Tirmizi, Stuart Aitken, Dilvan A. Moreira, Chris Mungall, Juan Sequeda, Nigam H. Shah, Daniel P. Miranker: OBO & OWL: Roundtrip Ontology Transformations. SWAT4LS 2009

Sapna Bafna, Julian Humphries, Daniel P. Miranker: Schema driven assignment and implementation of life science identifiers (LSIDs). Journal of Biomedical Informatics 41(5): 730-738 (2008)

Syed Hamid Tirmizi, Juan Sequeda, Daniel P. Miranker: Translating SQL Applications to the Semantic Web. DEXA 2008: 450-464

Daniel P. Miranker: Evolving models of biological sequence similarity. ICDE Workshops 2008: 301-307

Weijia Xu, Daniel P. Miranker, Rui Mao, Smriti R. Ramakrishnan: Anytime k-nearest neighbor search for database applications. ICDE Workshops 2008: 426-435

Juan Sequeda, Syed Hamid Tirmizi, Daniel P. Miranker: A Bootstrapping Architecture for Integration of Relational Databases to the Semantic Web. International Semantic Web Conference (Posters & Demos) 2008

Daniel P. Miranker: Evolving Models of Biological Sequence Similarity. SISAP 2008: 3-9

Weijia Xu, Daniel P. Miranker, Rui Mao, Smriti R. Ramakrishnan: Anytime K-Nearest Neighbor Search for Database Applications. SISAP 2008: 139-148

Shu Wang, Robin Ray Gutell, Daniel P. Miranker: Biclustering as a method for RNA local multiple sequence alignment. Bioinformatics 23(24): 3289-3296 (2007)

Xochitl C. Morgan, Shulin Ni, Daniel P. Miranker, Vishwanath R. Iyer: Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining. BMC Bioinformatics 8 (2007)

François Barbançon, Daniel P. Miranker: SPHINX: Schema integration by example. J. Intell. Inf. Syst. 29(2): 145-184 (2007)

Smriti R. Ramakrishnan, Rui Mao, Aleksey A. Nakorchevskiy, John T. Prince, Willard S. Willard, Weijia Xu, Edward M. Marcotte, Daniel P. Miranker: A fast coarse filtering method for peptide identification by mass spectrometry. Bioinformatics 22(12): 1524-1531 (2006)

Weijia Xu, Rui Mao, Shu Wang, Daniel P. Miranker: On Integrating Peptide Sequence Analysis and Relational Distance-Based Indexing. BIBE 2006: 27-34

Rui Mao, Weijia Xu, Neha Singh, Daniel P. Miranker: An Assessment of a Metric Space Database Index to Support Sequence Homology. International Journal on Artificial Intelligence Tools 14(5): 867-885 (2005)

Rui Mao, Wenguo Liu, Daniel P. Miranker, Qasim Iqbal: Case Study: Distance-Based Image Retrieval in the MoBIoS DBMS. CIT 2005: 49-57

Rui Mao, Weijia Xu, Smriti R. Ramakrishnan, Glen Nuckolls, Daniel P. Miranker: On Optimizing Distance-Based Similarity Search for Biological Databases. CSB 2005: 351-361

Weijia Xu, Daniel P. Miranker: A metric model of amino acid substitution. Bioinformatics 20(8): 1214-1221 (2004)

Weijia Xu, Daniel P. Miranker: A metric model of amino acid substitution. Bioinformatics 20(18): 3716 (2004)

Daniel P. Miranker, Willard J. Briggs, Rui Mao, Shulin Ni, Weijia Xu: Biosequence Use Cases in MoBIoS SQL. IEEE Data Eng. Bull. 27(3): 3-11 (2004)

François Barbançon, Daniel P. Miranker: Interactive Schema Integration with Sphinx. FQAS 2004: 175-190

Weijia Xu, Willard J. Briggs, Joanna Padolina, Ruth E. Timme, Wenguo Liu, C. Randal Linder, Daniel P. Miranker: Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes. ISMB/ECCB (Supplement of Bioinformatics) 2004: 355-362

Daniel P. Miranker: Metric-Space Indexes as a Basis for Scalable Biological Databases. OMICS 7(1): 57-60 (2003)

Luay Nakhleh, Daniel P. Miranker, François Barbançon, William H. Piel, Michael J. Donoghue: Requirements of Phylogenetic Databases. BIBE 2003: 141-148

Rui Mao, Weijia Xu, Neha Singh, Daniel P. Miranker: An Assessment of a Metric Space Database Index to Support Sequence Homology. BIBE 2003: 375-

Daniel P. Miranker, Weijia Xu, Rui Mao: MoBIoS: A Metric-Space DBMS to Support Biological Discovery. SSDBM 2003: 241-244

Joseph M. Hellerstein, Elias Koutsoupias, Daniel P. Miranker, Christos H. Papadimitriou, Vasilis Samoladas: On a model of indexability and its bounds for range queries. J. ACM 49(1): 35-55 (2002)

François Barbançon, Daniel P. Miranker: Implementing Federated Databases Systems by Compiling SchemaSQL. IDEAS 2002: 192-201

Daniel P. Miranker, Malcolm C. Taylor, Anand Padmanaban: A Tractable Query Cache by Approximation. SARA 2002: 140-151

Lane Warshaw, Daniel P. Miranker: Rule-Based Query Optimization, Revisited. CIKM 1999: 267-275

Vasilis Samoladas, Daniel P. Miranker: A Lower Bound Theorem for Indexing Schemes and Its Application to Multidimensional Range Queries. PODS 1998: 44-51

Daniel P. Miranker, Roberto J. Bayardo Jr., Vasilis Samoladas: Query Evaluation as Constraint Search; An Overview of Early Results. CDB 1997: 53-63

Lance Obermeyer, Daniel P. Miranker: Evaluating Triggers Using Decision Trees. CIKM 1997: 144-150

Daniel P. Miranker, Vasilis Samoladas: Alamo: An Architecture for Integrating Heterogeneous Data Sources. KRDB 1997: 14.1-14.8

Shiow-yang Wu, Daniel P. Miranker, James C. Browne: Decomposition Abstraction in Parallel Rule Languages. IEEE Trans. Parallel Distrib. Syst. 7(11): 1164-1184 (1996)

Roberto J. Bayardo Jr., Daniel P. Miranker: A Complexity Analysis of Space-Bounded Learning Algorithms for the Constraint Satisfaction Problem. AAAI/IAAI, Vol. 1 1996: 298-304

Roberto J. Bayardo Jr., Daniel P. Miranker: Processing Queries for First Few Answers. CIKM 1996: 45-52

Lane Warshaw, Daniel P. Miranker: A Case Study of Venus and a Declarative Basis for Rule Modules. CIKM 1996: 317-325

Daniel P. Miranker, Lance Obermeyer: An Overview of the VenusDB Active Multidatabase System. CODAS 1996: 108-117

Stephen Correl, Daniel P. Miranker: On Isolation, Concurrency, and the Venus Rule Language. CIKM 1995: 281-289

Roberto J. Bayardo Jr., Daniel P. Miranker: On the Space-Time Trade-off in Solving Constraint Satisfaction Problems. IJCAI 1995: 558-562

Roberto J. Bayardo Jr., Daniel P. Miranker: An Optimal Backtrack Algorithm for Tree-Structured Constraint Satisfaction problems. Artif. Intell. 71(1): 159-181 (1994)

François Pachet, Patrick Albert, Brian M. Barry, Brian Donnell, John McGehee, Dan Miranker: Embedded object-oriented production systems (OOPS): workshop report. OOPS Messenger 5(4): 87-91 (1994)

David Gadbois, Daniel P. Miranker: Discovering Procedural Executions of Rule-Based Programs. AAAI 1994: 459-464

Shiow-yang Wu, Daniel P. Miranker, James C. Browne: Toward Semantic-Based Parallelism in Production Systems. ICPADS 1994: 752-758

James C. Browne, E. Allen Emerson, Mohamed G. Gouda, Daniel P. Miranker, Aloysius K. Mok, Roberto J. Bayardo Jr., Sarah E. Chodrow, David Gadbois, F. Furman Haddix, Thomas W. Hetherington, Lance Obermeyer, Duu-Chung Tsou, Chih-Kan Wang, Rwo-Hsi Wang: A New Approach to Modularity in Rule-Based Programming. ICTAI 1994: 18-25

Benjamin W. Wah, Thomas S. Huang, Aravind K. Joshi, Dan I. Moldovan, Yiannis Aloimonos, Ruzena Bajcsy, Dana H. Ballard, Doug DeGroot, Kenneth DeJong, Charles R. Dyer, Scott E. Fahlman, Ralph Grishman, Lynette Hirschman, Richard E. Korf, Stephen E. Levinson, Daniel P. Miranker, N. H. Morgan, Sergei Nirenburg, Tomaso Poggio, Edward M. Riseman, Craig Stanfil, Salvatore J. Stolfo, Steven L. Tanimoto, Charles C. Weems: Report on Workshop on High Performance Computing and Communications for Grand Challenge Applications: Computer Vision, Speech and Natural Language Processing, and Artificial Intelligence. IEEE Trans. Knowl. Data Eng. 5(1): 138-154 (1993)

David A. Brant, Daniel P. Miranker: Index Support for Rule Activation. SIGMOD Conference 1993: 42-48

Mark Perlin, Jaime G. Carbonell, Daniel P. Miranker, Salvatore J. Stolfo, Milind Tambe: Is Production System Match Interesting? ICTAI 1992: 2-3

Daniel P. Miranker: Special Issue on the Parallel Execution of Rule Systems. J. Parallel Distrib. Comput. 13(4): 345-347 (1991)

Chin-Ming Kuo, Daniel P. Miranker, James C. Browne: On the Performance of the CREL System. J. Parallel Distrib. Comput. 13(4): 424-441 (1991)

Daniel P. Miranker, Bernie J. Lofaso: The Organization and Performance fo a TREAT-Based Production System Compiler. IEEE Trans. Knowl. Data Eng. 3(1): 3-10 (1991)

David A. Brant, Timothy Grose, Bernie J. Lofaso, Daniel P. Miranker: Effects of Database Size on Rule System Performance: Five Case Studies. VLDB 1991: 287-296

Daniel P. Miranker, David A. Brant, Bernie J. Lofaso, David Gadbois: On the Performance of Lazy Matching in Production Systems. AAAI 1990: 685-692

Daniel P. Miranker, David A. Brant: An Algorithmic Basis for Integrating Production Systems and Large Databases. ICDE 1990: 353-360

Daniel P. Miranker, Chin-Ming Kuo, James C. Browne: Parallelizing Compilation of Rule-Based Programs. ICPP (2) 1990: 247-251

Daniel P. Miranker, Archie D. Andrews: On Balanced Synchronous Parallel Computers for AI. ICPP (1) 1990: 489-493

Daniel P. Miranker: TREAT: A Better Match Algorithm for AI Production System Matching. AAAI 1987: 42-47

Salvatore J. Stolfo, Daniel P. Miranker: The DADO Production System Machine. J. Parallel Distrib. Comput. 3(2): 269-296 (1986)

Michael van Biema, Daniel P. Miranker, Salvatore J. Stolfo: The Do-loop Considered Harmful in Production System Programming. Expert Database Conf. 1986: 177-190

Daniel P. Miranker: Performance Estimates for the DADO Machine: A Comparison of Treat and Rete. FGCS 1984: 449-457

Salvatore J. Stolfo, Daniel P. Miranker, David Elliot Shaw: Architecture and Applications of DADO: A Large-Scale Parallel Computer for Artificial Intelligence. IJCAI 1983: 850-854