Kenji Mizuguchi

Gabriel Keeble-Gagnère, Johan Nyström-Persson, Matthew I. Bellgard, Kenji Mizuguchi: An Open Framework for Extensible Multi-stage Bioinformatics Software. PRIB 2012: 106-117

Gabriel Keeble-Gagnère, Johan Nyström-Persson, Matthew I. Bellgard, Kenji Mizuguchi: An Open Framework for Extensible Multi-Stage Bioinformatics Software. CoRR abs/1208.4436 (2012)

Michael Fernández, Yutaro Kumagai, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad: Prediction of dinucleotide-specific RNA-binding sites in proteins. BMC Bioinformatics 12(S-13): S5 (2011)

Yoichi Murakami, Kenji Mizuguchi: Applying the Naïve Bayes classifier with kernel density estimation to the prediction of protein-protein interaction sites. Bioinformatics 26(15): 1841-1848 (2010)

Shandar Ahmad, Yumlembam Hemjit Singh, Yogesh Paudel, Takaharu Mori, Yuji Sugita, Kenji Mizuguchi: Integrated prediction of one-dimensional structural features and their relationships with conformational flexibility in helical membrane proteins. BMC Bioinformatics 11: 533 (2010)

Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov: CCRXP: exploring clusters of conserved residues in protein structures. Nucleic Acids Research 38(Web-Server-Issue): 398-401 (2010)

Younes Mokrab, Kenji Mizuguchi: Amino-Acid Substitutions In Membrane Proteins: Applications To Homology Recognition And Comparative Modelling. BMC Bioinformatics 6(S-3) (2005)

Lucy A. Stebbings, Kenji Mizuguchi: HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database. Nucleic Acids Research 32(Database-Issue): 203-207 (2004)

Riccardo Bennett-Lovsey, Sarah E. Hart, Hiroki Shirai, Kenji Mizuguchi: The SWIB and the MDM2 domains are homologous and share a common fold. Bioinformatics 18(4): 626-630 (2002)

Paul I. W. de Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, J. Shi, Hiroki Shirai, Tom L. Blundell: HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families. Bioinformatics 17(8): 748-749 (2001)

Kenji Mizuguchi, Tom L. Blundell: Analysis of conservation and substitutions of secondary structure elements within protein superfamilies. Bioinformatics 16(12): 1111-1119 (2000)

Kenji Mizuguchi, Charlotte M. Deane, Tom L. Blundell, Mark S. Johnson, John P. Overington: JOY: protein sequence-structure representation and analysis. Bioinformatics 14(7): 617-623 (1998)