Vincent Moulton

Katharina T. Huber, Vincent Moulton: Encoding and Constructing 1-Nested Phylogenetic Networks with Trinets. Algorithmica 66(3): 714-738 (2013)

Andreas W. M. Dress, Vincent Moulton, Andreas Spillner, Taoyang Wu: Obtaining splits from cut sets of tight spans. Discrete Applied Mathematics 161(10-11): 1409-1420 (2013)

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton, Andreas Spillner: Basic Phylogenetic Combinatorics. Cambridge University Press 2012, isbn 978-0-521-76832-0, pp. I-XII, 1-264

Jan T. Kim, Anyela Camargo, Alessandra Devoto, Vincent Moulton, John Turner: Computational Modeling of the Regulatory Network Organizing the Wound Response in Arabidopsis thaliana. Artificial Life 18(4): 445-460 (2012)

Iain Martyn, Tyler S. Kuhn, Arne O. Mooers, Vincent Moulton, Andreas Spillner: Computing evolutionary distinctiveness indices in large scale analysis. Algorithms for Molecular Biology 7: 6 (2012)

Matthew B. Stocks, Simon Moxon, Daniel Mapleson, Hugh C. Woolfenden, Irina Mohorianu, Leighton Folkes, Frank Schwach, Tamas Dalmay, Vincent Moulton: The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics 28(15): 2059-2061 (2012)

Maribel Hernandez-Rosales, Marc Hellmuth, Nicolas Wieseke, Katharina T. Huber, Vincent Moulton, Peter F. Stadler: From event-labeled gene trees to species trees. BMC Bioinformatics 13(S-19): S6 (2012)

Sven Herrmann, Katharina T. Huber, Vincent Moulton, Andreas Spillner: Recognizing Treelike k-Dissimilarities. J. Classification 29(3): 321-340 (2012)

Jack H. Koolen, Alice Lesser, Vincent Moulton, Taoyang Wu: Injective optimal realizations of finite metric spaces. Discrete Mathematics 312(10): 1602-1610 (2012)

Sven Herrmann, Vincent Moulton: Trees, tight-spans and point configurations. Discrete Mathematics 312(16): 2506-2521 (2012)

Andreas Spillner, Binh T. Nguyen, Vincent Moulton: Constructing and Drawing Regular Planar Split Networks. IEEE/ACM Trans. Comput. Biology Bioinform. 9(2): 395-407 (2012)

Irina Mohorianu, Sara Lopez-Gomollon, Frank Schwach, Tamas Dalmay, Vincent Moulton: FiRePat - Finding Regulatory Patterns between sRNAs and Genes. Wiley Interdisc. Rew.: Data Mining and Knowledge Discovery 2(3): 273-284 (2012)

Katharina T. Huber, Vincent Moulton, Andreas Spillner, Sabine Storandt, Radoslaw Suchecki: Computing a Consensus of Multilabeled Trees. ALENEX 2012: 84-92

Sven Herrmann, Vincent Moulton: Computing the blocks of a quasi-median graph. CoRR abs/1206.6135 (2012)

Marc Thuillard, Vincent Moulton: Identifying and Reconstructing Lateral Transfers from Distance Matrices by Combining the Minimum Contradiction Method and Neighbor-Net. J. Bioinformatics and Computational Biology 9(4): 453-470 (2011)

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: Blocks and Cut Vertices of the Buneman Graph. SIAM J. Discrete Math. 25(4): 1902-1919 (2011)

Katharina T. Huber, Andreas Spillner, Radoslaw Suchecki, Vincent Moulton: Metrics on Multilabeled Trees: Interrelationships and Diameter Bounds. IEEE/ACM Trans. Comput. Biology Bioinform. 8(4): 1029-1040 (2011)

Vincent Moulton, Mike A. Steel: The 'Butterfly effect' in Cayley graphs, and its relevance for evolutionary genomics. CoRR abs/1104.5044 (2011)

Katharina T. Huber, Vincent Moulton: Encoding and Constructing 1-Nested Phylogenetic Networks with Trinets. CoRR abs/1110.0728 (2011)

Binh T. Nguyen, Andreas Spillner, Brent C. Emerson, Vincent Moulton: Distinguishing between hot-spots and melting-pots of genetic diversity using haplotype connectivity. Algorithms for Molecular Biology 5: 19 (2010)

Darren P. Martin, Philippe Lemey, Martin Lott, Vincent Moulton, David Posada, Pierre Lefeuvre: RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26(19): 2462-2463 (2010)

Daniel MacLean, Vincent Moulton, David J. Studholme: Finding sRNA generative locales from high-throughput sequencing data with NiBLS. BMC Bioinformatics 11: 93 (2010)

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton, Andreas Spillner: An Algorithm for Computing Cutpoints in Finite Metric Spaces. J. Classification 27(2): 158-172 (2010)

Vincent Moulton, Mona Singh (Eds.): Algorithms in Bioinformatics, 10th International Workshop, WABI 2010, Liverpool, UK, September 6-8, 2010. Proceedings. Lecture Notes in Computer Science 6293, Springer 2010, isbn 978-3-642-15293-1

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: A graph-theoretical invariant of topological spaces. Appl. Math. Lett. 22(2): 159-162 (2009)

Andreas W. M. Dress, Vincent Moulton, Andreas Spillner, Taoyang Wu: Barriers in metric spaces. Appl. Math. Lett. 22(8): 1150-1153 (2009)

Vincent Moulton, Andreas Spillner: Phylogenetic diversity and the maximum coverage problem. Appl. Math. Lett. 22(10): 1496-1499 (2009)

Martin Lott, Andreas Spillner, Katharina T. Huber, Vincent Moulton: PADRE: a package for analyzing and displaying reticulate evolution. Bioinformatics 25(9): 1199-1200 (2009)

Philippe Lemey, Martin Lott, Darren P. Martin, Vincent Moulton: Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning. BMC Bioinformatics 10 (2009)

Stefan Grünewald, Vincent Moulton, Andreas Spillner: Consistency of the QNet algorithm for generating planar split networks from weighted quartets. Discrete Applied Mathematics 157(10): 2325-2334 (2009)

Jack H. Koolen, Alice Lesser, Vincent Moulton: Optimal realizations of generic five-point metrics. Eur. J. Comb. 30(5): 1164-1171 (2009)

Daniel H. Huson, Vincent Moulton, Mike A. Steel: Special Section: Phylogenetics. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 4-6 (2009)

Stefan Grünewald, Vincent Moulton: Maximum Parsimony for Tree Mixtures. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 97-102 (2009)

Magnus Bordewich, Olivier Gascuel, Katharina T. Huber, Vincent Moulton: Consistency of Topological Moves Based on the Balanced Minimum Evolution Principle of Phylogenetic Inference. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 110-117 (2009)

Taoyang Wu, Vincent Moulton, Mike A. Steel: Refining Phylogenetic Trees Given Additional Data: An Algorithm Based on Parsimony. IEEE/ACM Trans. Comput. Biology Bioinform. 6(1): 118-125 (2009)

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton, Andreas Spillner: An algorithm for computing cutpoints in finite metric spaces. CoRR abs/0910.2317 (2009)

Simon Moxon, Vincent Moulton, Jan T. Kim: A scoring matrix approach to detecting miRNA target sites. Algorithms for Molecular Biology 3 (2008)

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: Cut points in metric spaces. Appl. Math. Lett. 21(6): 545-548 (2008)

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: Block realizations of finite metrics and the tight-span construction I: The embedding theorem. Appl. Math. Lett. 21(12): 1306-1309 (2008)

Simon Moxon, Frank Schwach, Tamas Dalmay, Daniel MacLean, David J. Studholme, Vincent Moulton: A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics 24(19): 2252-2253 (2008)

Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton, Andreas Spillner: Characterizing Cell-Decomposable Metrics. Electr. J. Comb. 15(1) (2008)

Y. B. Choe, Katharina T. Huber, Jacobus H. Koolen, Y. S. Kwon, Vincent Moulton: Counting vertices and cubes in median graphs of circular split systems. Eur. J. Comb. 29(2): 443-456 (2008)

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: Compatible decompositions and block realizations of finite metrics. Eur. J. Comb. 29(7): 1617-1633 (2008)

Katharina T. Huber, Martin Lott, Vincent Moulton, Andreas Spillner: The Complexity of Deriving Multi-Labeled Trees from Bipartitions. Journal of Computational Biology 15(6): 639-651 (2008)

Andreas Spillner, Binh T. Nguyen, Vincent Moulton: Computing Phylogenetic Diversity for Split Systems. IEEE/ACM Trans. Comput. Biology Bioinform. 5(2): 235-244 (2008)

Anthony Bagnall, Simon Moxon, David J. Studholme, Vincent Moulton: Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana. BIOCOMP 2008: 182-188

Stefan Grünewald, Andreas Spillner, Kristoffer Forslund, Vincent Moulton: Constructing Phylogenetic Supernetworks from Quartets. WABI 2008: 284-295

David Bryant, Vincent Moulton, Andreas Spillner: Consistency of the Neighbor-Net Algorithm. Algorithms for Molecular Biology 2 (2007)

Eva Freyhult, Vincent Moulton, Peter Clote: Boltzmann probability of RNA structural neighbors and riboswitch detection. Bioinformatics 23(16): 2054-2062 (2007)

Jack H. Koolen, Alice Lesser, Vincent Moulton: Concerning the Relationship between Realizations and Tight Spans of Finite Metrics. Discrete & Computational Geometry 38(3): 605-614 (2007)

Sejeong Bang, Jacobus H. Koolen, Vincent Moulton: Two theorems concerning the Bannai-Ito conjecture. Eur. J. Comb. 28(7): 2026-2052 (2007)

Eva Freyhult, Vincent Moulton, Peter Clote: RNAbor: a web server for RNA structural neighbors. Nucleic Acids Research 35(Web-Server-Issue): 305-309 (2007)

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: An Algorithm for Computing Virtual Cut Points in Finite Metric Spaces. COCOA 2007: 4-10

Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: On the structure of the tight-span of a totally split-decomposable metric. Eur. J. Comb. 27(3): 461-479 (2006)

Warwick Tucker, Vincent Moulton: Parameter Reconstruction for Biochemical Networks Using Interval Analysis. Reliable Computing 12(5): 389-402 (2006)

Barbara Holland, Glenn Conner, Katharina T. Huber, Vincent Moulton: Imputing Supertrees and Supernetworks from Quartets. WABI 2006: 162

Katharina T. Huber, Vincent Moulton, Charles Semple, Mike A. Steel: Recovering a phylogenetic tree using pairwise closure operations. Appl. Math. Lett. 18(3): 361-366 (2005)

Eva Freyhult, Peteris Prusis, Maris Lapinsh, Jarl E. S. Wikberg, Vincent Moulton, Mats G. Gustafsson: Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling. BMC Bioinformatics 6: 50 (2005)

Eva Freyhult, Paul P. Gardner, Vincent Moulton: A comparison of RNA folding measures. BMC Bioinformatics 6: 241 (2005)

Andreas W. M. Dress, Barbara Holland, Katharina T. Huber, Jack H. Koolen, Vincent Moulton, Jan Weyer-Menkhoff: Delta additive and Delta ultra-additive maps, Gromov's trees, and the Farris transform. Discrete Applied Mathematics 146(1): 51-73 (2005)

Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: The tight span of an antipodal metric space - Part I: : Combinatorial properties. Discrete Mathematics 303(1-3): 65-79 (2005)

Katharina T. Huber, Vincent Moulton, Michael Anthony Steel: Four Characters Suffice to Convexly Define a Phylogenetic Tree. SIAM J. Discrete Math. 18(4): 835-843 (2005)

Warwick Tucker, Vincent Moulton: Reconstructing Metabolic Networks Using Interval Analysis. WABI 2005: 192-203

Kristoffer Forslund, Daniel H. Huson, Vincent Moulton: VisRD--visual recombination detection. Bioinformatics 20(18): 3654-3655 (2004)

Katharina T. Huber, Vincent Moulton, Charles Semple: Replacing cliques by stars in quasi-median graphs. Discrete Applied Mathematics 143(1-3): 194-203 (2004)

Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: The Tight Span of an Antipodal Metric Space: Part II--Geometrical Properties. Discrete & Computational Geometry 31(4): 567-586 (2004)

Jack H. Koolen, Vincent Moulton, Dragan Stevanovic: The structure of spherical graphs. Eur. J. Comb. 25(2): 299-310 (2004)

Dietmar Cieslik, Andreas W. M. Dress, Katharina T. Huber, Vincent Moulton: Connectivity calculus. Appl. Math. Lett. 16(3): 395-399 (2003)

Sverker Edvardsson, Paul P. Gardner, Anthony M. Poole, Michael D. Hendy, David Penny, Vincent Moulton: A Search for H/ACA SnoRNAs in Yeast Using MFE Secondary Structure Prediction. Bioinformatics 19(7): 865-873 (2003)

Andreas W. M. Dress, Jack H. Koolen, Vincent Moulton: Addendum to "on line arrangements in the hyperbolic plane" [European J. Combin.23 (2002) 549-557]. Eur. J. Comb. 24(3): 347 (2003)

Sejeong Bang, Jack H. Koolen, Vincent Moulton: A bound for the number of columns l_{(c, a, b)} in the intersection array of a distance-regular graph. Eur. J. Comb. 24(7): 785-795 (2003)

Jack H. Koolen, Vincent Moulton: Maximal Energy Bipartite Graphs. Graphs and Combinatorics 19(1): 131-135 (2003)

Barbara Holland, Vincent Moulton: Consensus Networks: A Method for Visualising Incompatibilities in Collections of Trees. WABI 2003: 165-176

Hans-Jürgen Bandelt, Katharina T. Huber, Vincent Moulton: Quasi-median graphs from sets of partitions. Discrete Applied Mathematics 122(1-3): 23-35 (2002)

Katharina T. Huber, Vincent Moulton: The relation graph. Discrete Mathematics 244(1-3): 153-166 (2002)

Andreas W. M. Dress, Katharina T. Huber, Vincent Moulton: Antipodal Metrics and Split Systems. Eur. J. Comb. 23(2): 187-200 (2002)

Andreas W. M. Dress, Jack H. Koolen, Vincent Moulton: On Line Arrangements in the Hyperbolic Plane. Eur. J. Comb. 23(5): 549-557 (2002)

Jack H. Koolen, Vincent Moulton: Hyperbolic Bridged Graphs. Eur. J. Comb. 23(6): 683-699 (2002)

Jack H. Koolen, Vincent Moulton: On a Conjecture of Bannai and Ito: There are Finitely Many Distance-regular Graphs with Degree 5, 6 or 7. Eur. J. Comb. 23(8): 987-1006 (2002)

David Bryant, Vincent Moulton: NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic Networks. WABI 2002: 375-391

Andreas W. M. Dress, Katharina T. Huber, Jacobus H. Koolen, Vincent Moulton: Six Points Suffice: How to Check for Metric Consistency. Eur. J. Comb. 22(4): 465-474 (2001)

Andreas W. M. Dress, Katharina T. Huber, Vincent Moulton: Affine Maps That Induce Polyhedral Complex Isomorphisms. Discrete & Computational Geometry 24(1): 49-60 (2000)

Oliver Goodman, Vincent Moulton: On the tight span of an antipodal graph. Discrete Mathematics 218(1-3): 73-96 (2000)

Jack H. Koolen, Vincent Moulton, Udo Tönges: A Classification of the Six-point Prime Metrics. Eur. J. Comb. 21(6): 815-829 (2000)

Vincent Moulton, Michael Zuker, Mike A. Steel, Robin Pointon, David Penny: Metrics on RNA Secondary Structures. Journal of Computational Biology 7(1-2): 277-292 (2000)

Vincent Moulton, Mike A. Steel: Retractions of Finite Distance Functions Onto Tree Metrics. Discrete Applied Mathematics 91(1-3): 215-233 (1999)

Andreas W. M. Dress, Katharina T. Huber, Vincent Moulton: Some new perspectives regarding sparse continuous models for discrete data structures. Electronic Notes in Discrete Mathematics 2: 69-75 (1999)

Jack H. Koolen, Vincent Moulton, Udo Tönges: The coherency index. Discrete Mathematics 192(1-3): 205-222 (1998)

Jens Stoye, Vincent Moulton, Andreas W. M. Dress: DCA: an efficient implementation of the divide-and-conquer approach to simultaneous multiple sequence alignment. Computer Applications in the Biosciences 13(6): 625-626 (1997)

Andreas W. M. Dress, Daniel H. Huson, Vincent Moulton: Analyzing and Visualizing Sequence and Distance Data Using SplitsTree. Discrete Applied Mathematics 71(1-3): 95-109 (1996)

Andreas W. M. Dress, Vincent Moulton, Werner F. Terhalle: T-theory: An Overview. Eur. J. Comb. 17(2-3): 161-175 (1996)