Poul M. F. Nielsen

Tommy Yu, Catherine M. Lloyd, David P. Nickerson, Mike T. Cooling, Andrew K. Miller, Alan Garny, Jonna R. Terkildsen, James R. Lawson, Randall Britten, Peter J. Hunter, Poul M. F. Nielsen: The Physiome Model Repository 2. Bioinformatics 27(5): 743-744 (2011)

Andrew K. Miller, Tommy Yu, Randall Britten, Mike T. Cooling, James R. Lawson, Dougal Cowan, Alan Garny, Matt D. B. Halstead, Peter J. Hunter, David P. Nickerson, Geoff Nunns, Sarala M. Wimalaratne, Poul M. F. Nielsen: Revision history aware repositories of computational models of biological systems. BMC Bioinformatics 12: 22 (2011)

Dagmar Waltemath, Richard Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic Tolle, Olaf Wolkenhauer, Nicolas Le Novère: Minimum Information About a Simulation Experiment (MIASE). PLoS Computational Biology 7(4) (2011)

Andrew K. Miller, Justin Marsh, Adam Reeve, Alan Garny, Randall Britten, Matt D. B. Halstead, Jonathan Cooper, David P. Nickerson, Poul M. F. Nielsen: An overview of the CellML API and its implementation. BMC Bioinformatics 11: 178 (2010)

Sarala M. Wimalaratne, Matt D. B. Halstead, Catherine M. Lloyd, Edmund J. Crampin, Poul M. F. Nielsen: Biophysical annotation and representation of CellML models. Bioinformatics 25(17): 2263-2270 (2009)

Sarala M. Wimalaratne, Matt D. B. Halstead, Catherine M. Lloyd, Mike T. Cooling, Edmund J. Crampin, Poul M. F. Nielsen: A method for visualizing CellML models. Bioinformatics 25(22): 3012-3019 (2009)

Peter J. Hunter, Edmund J. Crampin, Poul M. F. Nielsen: Bioinformatics, multiscale modeling and the IUPS Physiome Project. Briefings in Bioinformatics 9(4): 333-343 (2008)

Catherine M. Lloyd, James R. Lawson, Peter J. Hunter, Poul M. F. Nielsen: The CellML Model Repository. Bioinformatics 24(18): 2122-2123 (2008)

David P. Nickerson, Martyn P. Nash, Poul M. F. Nielsen, Nicolas Smith, Peter J. Hunter: Computational multiscale modeling in the IUPS Physiome Project: Modeling cardiac electromechanics. IBM Journal of Research and Development 50(6): 617-630 (2006)

Michael Hucka, Andrew Finney, Herbert M. Sauro, H. Bolouri, John C. Doyle, Hiroaki Kitano, Adam P. Arkin, Benjamin J. Bornstein, D. Bray, A. Cornish-Bowden, Autumn A. Cuellar, Serge Dronov, Ernst Dieter Gilles, Martin Ginkel, Victoria Gor, Igor Goryanin, W. J. Hedley, T. Charles Hodgman, J. H. Hofmeyr, Peter J. Hunter, Nick S. Juty, J. L. Kasberger, Andreas Kremling, Ursula Kummer, Nicolas Le Novère, Leslie M. Loew, D. Lucio, Pedro Mendes, E. Minch, Eric Mjolsness, Yoichi Nakayama, M. R. Nelson, Poul M. F. Nielsen, T. Sakurada, James C. Schaff, Bruce E. Shapiro, Thomas Simon Shimizu, Hugh D. Spence, Jörg Stelling, Koichi Takahashi, Masaru Tomita, J. Wagner, J. Wang: The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models. Bioinformatics 19(4): 524-531 (2003)

Autumn A. Cuellar, Catherine M. Lloyd, Poul M. F. Nielsen, David P. Bullivant, David P. Nickerson, Peter J. Hunter: An Overview of CellML 1.1, a Biological Model Description Language. Simulation 79(12): 740-747 (2003)