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 | 2013 | |
|---|---|---|
| j13 |      | Anasua Sarkar, Macha Nikolski, Pascal Durrens: The family based variability in protein family expansion. IJBRA 9(2): 121-133 (2013) |
| 2011 | ||
| j12 | | Anasua Sarkar, Hayssam Soueidan, Macha Nikolski: Identification of conserved gene clusters in multiple genomes based on synteny and homology. BMC Bioinformatics 12(S-9): S18 (2011) |
| j11 | | Géraldine Jean, Macha Nikolski: SyDiG: uncovering Synteny in Distant Genomes. IJBRA 7(1): 43-62 (2011) |
| j10 | | Dagmar Waltemath, Richard Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic Tolle, Olaf Wolkenhauer, Nicolas Le Novère: Minimum Information About a Simulation Experiment (MIASE). PLoS Computational Biology 7(4) (2011) |
| 2009 | ||
| j9 | | Macha Nikolski, David James Sherman: Family relationships: should consensus reign? - consensus clustering for protein families. Bioinformatics 25(17): 2294 (2009) |
| j8 | | Géraldine Jean, David James Sherman, Macha Nikolski: Mining the Semantics of Genome Super-Blocks to Infer Ancestral Architectures. Journal of Computational Biology 16(9): 1267-1284 (2009) |
| j7 | | David James Sherman, Tiphaine Martin, Macha Nikolski, Cyril Cayla, Jean-Luc Souciet, Pascal Durrens: Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes. Nucleic Acids Research 37(Database-Issue): 550-554 (2009) |
| c3 | | Hayssam Soueidan, Grégoire Sutre, Macha Nikolski: Qualitative Transition Systems for the Abstraction and Comparison of Transient Behavior in Parametrized Dynamic Models. CMSB 2009: 313-327 |
| c2 | | Nikolay Vyahhi, Adrien Goëffon, Macha Nikolski, David James Sherman: Swarming along the evolutionary branches sheds light on genome rearrangement scenarios. GECCO 2009: 241-246 |
| 2008 | ||
| j6 | | Pascal Durrens, Macha Nikolski, David James Sherman: Fusion and Fission of Genes Define a Metric between Fungal Genomes. PLoS Computational Biology 4(10) (2008) |
| c1 | | Adrien Goëffon, Macha Nikolski, David James Sherman: An efficient probabilistic population-based descent for the median genome problem. GECCO 2008: 315-322 |
| 2007 | ||
| j5 | | Macha Nikolski, David James Sherman: Family relationships: should consensus reign? - consensus clustering for protein families. Bioinformatics 23(2): 71-76 (2007) |
| j4 | | Géraldine Jean, Macha Nikolski: Genome rearrangements: a correct algorithm for optimal capping. Inf. Process. Lett. 104(1): 14-20 (2007) |
| 2006 | ||
| j3 | | David James Sherman, Pascal Durrens, Florian Iragne, Emmanuelle Beyne, Macha Nikolski, Jean-Luc Souciet: Génolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts. Nucleic Acids Research 34(Database-Issue): 432-435 (2006) |
| 2005 | ||
| j2 | | Florian Iragne, Macha Nikolski, Bertrand Mathieu, David Auber, David James Sherman: ProViz: protein interaction visualization and exploration. Bioinformatics 21(2): 272-274 (2005) |
| 2004 | ||
| j1 | | David James Sherman, Pascal Durrens, Emmanuelle Beyne, Macha Nikolski: Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts. Nucleic Acids Research 32(Database-Issue): 315-318 (2004) |
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