Natalya Fridman Noy

Tania Tudorache, Csongor Nyulas, Natalya Fridman Noy, Mark A. Musen: WebProtégé: A collaborative ontology editor and knowledge acquisition tool for the Web. Semantic Web 4(1): 89-99 (2013)

Mark A. Musen, Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne D. Storey, Barry Smith: The National Center for Biomedical Ontology. JAMIA 19(2): 190-195 (2012)

Mathieu d'Aquin, Natalya Fridman Noy: Where to publish and find ontologies? A survey of ontology libraries. J. Web Sem. 11: 96-111 (2012)

Simon Walk, Markus Strohmaier, Tania Tudorache, Natalya Fridman Noy, Csongor Nyulas, Mark A. Musen: Recommending Concepts to Experts: An Exploration of Recommender Techniques for Collaborative Ontology Engineering Platforms in the Biomedical Domain. ICBO 2012

Matthew Horridge, Mikel Egaña Aranguren, Jonathan Mortensen, Mark A. Musen, Natalya Fridman Noy: Ontology Design Pattern Language Expressivity Requirements. WOP 2012

Jonathan Mortensen, Matthew Horridge, Mark A. Musen, Natalya Fridman Noy: Modest Use of Ontology Design Patterns in a Repository of Biomedical Ontologies. WOP 2012

Manuel Salvadores, Matthew Horridge, Paul R. Alexander, Ray W. Fergerson, Mark A. Musen, Natalya Fridman Noy: Using SPARQL to Query BioPortal Ontologies and Metadata. International Semantic Web Conference (2) 2012: 180-195

Cristina Sarasua, Elena Simperl, Natalya Fridman Noy: CrowdMap: Crowdsourcing Ontology Alignment with Microtasks. International Semantic Web Conference (1) 2012: 525-541

Jessica D. Tenenbaum, Patricia L. Whetzel, Kent Anderson, Charles D. Borromeo, Ivo D. Dinov, Davera Gabriel, Beth A. Kirschner, Barbara Mirel, Timothy D. Morris, Natasha Fridman Noy, Csongor Nyulas, David Rubenson, Paul R. Saxman, Harpreet Singh, Nancy Whelan, Zach Wright, Brian D. Athey, Michael J. Becich, Geoffrey S. Ginsburg, Mark A. Musen, Kevin A. Smith, Alice F. Tarantal, Daniel L. Rubin, Peter Lyster: The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. Journal of Biomedical Informatics 44(1): 137-145 (2011)

Patricia L. Whetzel, Natalya Fridman Noy, Nigam H. Shah, Paul R. Alexander, Csongor Nyulas, Tania Tudorache, Mark A. Musen: BioPortal: enhanced functionality via new Web services from the National Center for Biomedical Ontology to access and use ontologies in software applications. Nucleic Acids Research 39(Web-Server-Issue): 541-545 (2011)

Clement Jonquet, Paea LePendu, Sean M. Falconer, Adrien Coulet, Natalya Fridman Noy, Mark A. Musen, Nigam H. Shah: NCBO Resource Index: Ontology-based search and mining of biomedical resources. J. Web Sem. 9(3): 316-324 (2011)

Sean M. Falconer, Natalya Fridman Noy: Interactive Techniques to Support Ontology Matching. Schema Matching and Mapping 2011: 29-51

Cui Tao, Natalya Fridman Noy, Harold R. Solbrig, Nigam H. Shah, Mark A. Musen, Christopher G. Chute: Proposed SKOS Extensions for BioPortal Terminology Services. JIST 2011: 342-349

Paul R. Alexander, Csongor Nyulas, Tania Tudorache, Patricia L. Whetzel, Natalya Fridman Noy, Mark A. Musen: Semantic infrastructure to enable collaboration in ontology development. CTS 2011: 423-430

Jithun Nair, Tania Tudorache, Trish Whetzel, Natalya Fridman Noy, Mark A. Musen: The BioPortal Import Plugin for Protégé. ICBO 2011

Patricia L. Whetzel, Natasha F. Noy, Nigam Shah, Paul R. Alexander, Michael Dorf, Ray W. Fergerson, Margaret-Anne D. Storey, Barry Smith, Christopher G. Chute, Mark A. Musen: Bioportal: Ontologies and Integrated Data Resources at the Click of a Mouse. ICBO 2011

Tania Tudorache, Natalya Fridman Noy, Sean M. Falconer, Mark A. Musen: A knowledge base driven user interface for collaborative ontology development. IUI 2011: 411-414

Sean M. Falconer, Tania Tudorache, Natalya Fridman Noy: An analysis of collaborative patterns in large-scale ontology development projects. K-CAP 2011: 25-32

Amir Ghazvinian, Natalya Fridman Noy, Mark A. Musen: From mappings to modules: using mappings to identify domain-specific modules in large ontologies. K-CAP 2011: 33-40

Lora Aroyo, Chris Welty, Harith Alani, Jamie Taylor, Abraham Bernstein, Lalana Kagal, Natasha Fridman Noy, Eva Blomqvist (Eds.): The Semantic Web - ISWC 2011 - 10th International Semantic Web Conference, Bonn, Germany, October 23-27, 2011, Proceedings, Part I. Lecture Notes in Computer Science 7031, Springer 2011, isbn 978-3-642-25072-9

Lora Aroyo, Chris Welty, Harith Alani, Jamie Taylor, Abraham Bernstein, Lalana Kagal, Natasha Fridman Noy, Eva Blomqvist (Eds.): The Semantic Web - ISWC 2011 - 10th International Semantic Web Conference, Bonn, Germany, October 23-27, 2011, Proceedings, Part II. Lecture Notes in Computer Science 7032, Springer 2011, isbn 978-3-642-25092-7

Tania Tudorache, Sean M. Falconer, Natalya Fridman Noy, Csongor Nyulas, Tevfik Bedirhan Üstün, Margaret-Anne D. Storey, Mark A. Musen: Ontology Development for the Masses: Creating ICD-11 in WebProtégé. EKAW 2010: 74-89

Sean M. Falconer, Tania Tudorache, Csongor Nyulas, Natalya Fridman Noy, Mark A. Musen: WebProtégé: Supporting the Creation of ICD-11. ISWC Posters&Demos 2010

Amir Ghazvinian, Natasha Fridman Noy, Mark A. Musen: From mappings to modules: using mappings to identify domain-specific modules in large ontologies. OM 2010

Tania Tudorache, Sean M. Falconer, Csongor Nyulas, Natalya Fridman Noy, Mark A. Musen: Will Semantic Web Technologies Work for the Development of ICD-11? International Semantic Web Conference (2) 2010: 257-272

Paea LePendu, Natalya Fridman Noy, Clement Jonquet, Paul R. Alexander, Nigam H. Shah, Mark A. Musen: Optimize First, Buy Later: Analyzing Metrics to Ramp-Up Very Large Knowledge Bases. International Semantic Web Conference (1) 2010: 486-501

Anna Tordai, Amir Ghazvinian, Jacco van Ossenbruggen, Mark A. Musen, Natasha Fridman Noy: Lost in translation? Empirical analysis of mapping compositions for large ontologies. OM 2010

Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Daniel L. Rubin, Margaret-Anne D. Storey, Christopher G. Chute, Mark A. Musen: BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research 37(Web-Server-Issue): 170-173 (2009)

Amir Ghazvinian, Natalya Fridman Noy, Clement Jonquet, Nigam H. Shah, Mark A. Musen: What Four Million Mappings Can Tell You about Two Hundred Ontologies. International Semantic Web Conference 2009: 229-242

Natalya Fridman Noy, Mark A. Musen: Traversing Ontologies to Extract Views. Modular Ontologies 2009: 245-260

Yolanda Gil, Natasha Fridman Noy (Eds.): Proceedings of the 5th International Conference on Knowledge Capture (K-CAP 2009), September 1-4, 2009, Redondo Beach, California, USA. ACM 2009, isbn 978-1-60558-658-8

Pavel Shvaiko, Jérôme Euzenat, Fausto Giunchiglia, Heiner Stuckenschmidt, Natalya Fridman Noy, Arnon Rosenthal (Eds.): Proceedings of the 4th International Workshop on Ontology Matching (OM-2009) collocated with the 8th International Semantic Web Conference (ISWC-2009) Chantilly, USA, October 25, 2009. CEUR Workshop Proceedings 551, CEUR-WS.org 2009

Natalya Fridman Noy, Sherri de Coronado, Harold R. Solbrig, Gilberto Fragoso, Frank W. Hartel, Mark A. Musen: Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages. Applied Ontology 3(3): 173-190 (2008)

Daniel L. Rubin, Nigam Shah, Natalya Fridman Noy: Biomedical ontologies: a functional perspective. Briefings in Bioinformatics 9(1): 75-90 (2008)

Natalya Fridman Noy, Abhita Chugh, Harith Alani: The CKC Challenge: Exploring Tools for Collaborative Knowledge Construction. IEEE Intelligent Systems 23(1): 64-68 (2008)

Natalya Fridman Noy, Daniel L. Rubin: Translating the Foundational Model of Anatomy into OWL. J. Web Sem. 6(2): 133-136 (2008)

Natalya Fridman Noy, Tania Tudorache: Collaborative Ontology Development on the (Semantic) Web. AAAI Spring Symposium: Symbiotic Relationships between Semantic Web and Knowledge Engineering 2008: 63-68

Abraham Sebastian, Natalya Fridman Noy, Tania Tudorache, Mark A. Musen: A Generic Ontology for Collaborative Ontology-Development Workflows. EKAW 2008: 318-328

Tania Tudorache, Jennifer Vendetti, Natalya Fridman Noy: Web-Protege: A Lightweight OWL Ontology Editor for the Web. OWLED 2008

Tania Tudorache, Natalya Fridman Noy, Samson W. Tu, Mark A. Musen: Supporting Collaborative Ontology Development in Protégé. International Semantic Web Conference 2008: 17-32

Natalya Fridman Noy, Nicholas Griffith, Mark A. Musen: Collecting Community-Based Mappings in an Ontology Repository. International Semantic Web Conference 2008: 371-386

Natalya Fridman Noy, Nigam Shah, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Michael Montegut, Daniel L. Rubin, Cherie Youn, Mark A. Musen: BioPortal: A Web Repository for Biomedical Ontologies and Data Resources. International Semantic Web Conference (Posters & Demos) 2008

Tania Tudorache, Natalya Fridman Noy, Mark A. Musen: Collaborative Protege: Enabling Community-based Authoring of Ontologies. International Semantic Web Conference (Posters & Demos) 2008

Woei-Jyh Lee, Louiqa Raschid, Padmini Srinivasan, Nigam Shah, Daniel L. Rubin, Natasha Fridman Noy: Using Annotations from Controlled Vocabularies to Find Meaningful Associations. DILS 2007: 247-263

Harith Alani, Natasha Fridman Noy, Nigam Shah, Nigel Shadbolt, Mark A. Musen: Searching ontologies based on content: experiments in the biomedical domain. K-CAP 2007: 55-62

Kaustubh Supekar, Daniel L. Rubin, Natasha F. Noy, Mark A. Musen: Knowledge Zone: A Public Repository of Peer-Reviewed Biomedical Ontologies. MedInfo 2007: 812-816

Sean M. Falconer, Natalya Fridman Noy, Margaret-Anne D. Storey: Ontology Mapping - a User Survey. OM 2007

Tania Tudorache, Natalya Fridman Noy: Collaborative Protege. CKC 2007

Karl Aberer, Key-Sun Choi, Natasha Fridman Noy, Dean Allemang, Kyung-Il Lee, Lyndon J. B. Nixon, Jennifer Golbeck, Peter Mika, Diana Maynard, Riichiro Mizoguchi, Guus Schreiber, Philippe Cudré-Mauroux (Eds.): The Semantic Web, 6th International Semantic Web Conference, 2nd Asian Semantic Web Conference, ISWC 2007 + ASWC 2007, Busan, Korea, November 11-15, 2007. Lecture Notes in Computer Science 4825, Springer 2007, isbn 978-3-540-76297-3

Natalya Fridman Noy, Harith Alani, Gerd Stumme, Peter Mika, York Sure, Denny Vrandecic (Eds.): Proceedings of the Workshop on Social and Collaborative Construction of Structured Knowledge (CKC 2007) at the 16th International World Wide Web Conference (WWW2007) Banff, Canada, May 8, 2007. CEUR Workshop Proceedings 273, CEUR-WS.org 2007

Sean M. Falconer, Natalya Fridman Noy, Margaret-Anne D. Storey: Towards Understanding the Needs of Cognitive Support for Ontology Mapping. Ontology Matching 2006

Natalya Fridman Noy, Abhita Chugh, William Liu, Mark A. Musen: A Framework for Ontology Evolution in Collaborative Environments. International Semantic Web Conference 2006: 544-558

Pavel Shvaiko, Jérôme Euzenat, Natalya Fridman Noy, Heiner Stuckenschmidt, V. Richard Benjamins, Michael Uschold (Eds.): Proceedings of the 1st International Workshop on Ontology Matching (OM-2006) Collocated with the 5th International Semantic Web Conference (ISWC-2006), Athens, Georgia, USA, November 5, 2006. CEUR Workshop Proceedings 225, CEUR-WS.org 2006

Natalya Fridman Noy, AnHai Doan, Alon Y. Halevy: Semantic Integration. AI Magazine 26(1): 7-10 (2005)

Chih-Sheng Johnson Hou, Mark A. Musen, Natalya Fridman Noy: EZPAL: Environment for composing constraint axioms by instantiating templates. Int. J. Hum.-Comput. Stud. 62(5): 578-596 (2005)

Frederico Luiz Gonçalves de Freitas, Heiner Stuckenschmidt, Natalya Fridman Noy: Ontology Issues and Applications - Guest Editors' Introduction. J. Braz. Comp. Soc. 11(2): 5-16 (2005)

Natalya Fridman Noy: Order from chaos. ACM Queue 3(8): 42-49 (2005)

Natalya Fridman Noy, Ramanathan V. Guha, Mark A. Musen: User Ratings of Ontologies: Who Will Rate the Raters? AAAI Spring Symposium: Knowledge Collection from Volunteer Contributors 2005: 56-63

Natasha F. Noy, Heiner Stuckenschmidt: Ontology Alignment: An annotated Bibliography. Semantic Interoperability and Integration 2005

Holger Knublauch, Matthew Horridge, Mark A. Musen, Alan L. Rector, Robert Stevens, Nick Drummond, Phillip W. Lord, Natalya Fridman Noy, Julian Seidenberg, Hai Wang: The Protege OWL Experience. OWLED 2005

Prasenjit Mitra, Natasha F. Noy, Anuj R. Jaiswal: OMEN: A Probabilistic Ontology Mapping Tool. International Semantic Web Conference 2005: 537-547

AnHai Doan, Alon Y. Halevy, Natalya Fridman Noy: Semantic Integration Workshop at the Second International Semantic Web Conference (ISWC-2003). AI Magazine 25(1): 109-112 (2004)

Natalya Fridman Noy, Mark A. Musen, José L. V. Mejino Jr., Cornelius Rosse: Pushing the envelope: challenges in a frame-based representation of human anatomy. Data Knowl. Eng. 48(3): 335-359 (2004)

Natalya Fridman Noy, Mark A. Musen: Ontology Versioning in an Ontology Management Framework. IEEE Intelligent Systems 19(4): 6-13 (2004)

York Sure, Asunción Gómez-Pérez, Walter Daelemans, Marie-Laure Reinberger, Nicola Guarino, Natalya Fridman Noy: Why Evaluate Ontology Technologies? Because It Works!. IEEE Intelligent Systems 19(4): 74-81 (2004)

Natalya Fridman Noy, Daniel L. Rubin, Mark A. Musen: Making Biomedical Ontologies and Ontology Repositories Work. IEEE Intelligent Systems 19(6): 78-81 (2004)

Natalya Fridman Noy, Michel C. A. Klein: Ontology Evolution: Not the Same as Schema Evolution. Knowl. Inf. Syst. 6(4): 428-440 (2004)

AnHai Doan, Alon Y. Halevy, Natalya Fridman Noy: Semantic Integration Workshop at the 2nd International Semantic Web Conference (ISWC-2003). SIGMOD Record 33(1): 138-140 (2004)

AnHai Doan, Natalya Fridman Noy, Alon Y. Halevy: Introduction to the Special Issue on Semantic Integration. SIGMOD Record 33(4): 11-13 (2004)

Natalya Fridman Noy: Semantic Integration: A Survey Of Ontology-Based Approaches. SIGMOD Record 33(4): 65-70 (2004)

Natalya Fridman Noy: Tools for Mapping and Merging Ontologies. Handbook on Ontologies 2004: 365-384

Holger Knublauch, Ray W. Fergerson, Natalya Fridman Noy, Mark A. Musen: The Protégé OWL Plugin: An Open Development Environment for Semantic Web Applications. International Semantic Web Conference 2004: 229-243

Natalya Fridman Noy, Sandhya Kunnatur, Michel C. A. Klein, Mark A. Musen: Tracking Changes During Ontology Evolution. International Semantic Web Conference 2004: 259-273

Natalya Fridman Noy, Mark A. Musen: Specifying Ontology Views by Traversal. International Semantic Web Conference 2004: 713-725

Iwei Yeh, Peter D. Karp, Natalya Fridman Noy, Russ B. Altman: Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO). Bioinformatics 19(2): 241-248 (2003)

John H. Gennari, Mark A. Musen, Ray W. Fergerson, William E. Grosso, Monica Crubézy, Henrik Eriksson, Natalya Fridman Noy, Samson W. Tu: The evolution of Protégé: an environment for knowledge-based systems development. Int. J. Hum.-Comput. Stud. 58(1): 89-123 (2003)

Martin R. Frank, Natalya Fridman Noy, Steffen Staab: Report on the Semantic Web Workshop at WWW 2002. SIGMOD Record 31(3): 64-67 (2002)

Natalya Fridman Noy, Mark A. Musen: PROMPTDIFF: A Fixed-Point Algorithm for Comparing Ontology Versions. AAAI/IAAI 2002: 744-750

Chih-Sheng Johnson Hou, Natalya Fridman Noy, Mark A. Musen: A Template-Based Approach Toward Acquisition of Logical Sentences. Intelligent Information Processing 2002: 77-89

Margaret-Anne D. Storey, Natasha F. Noy, Mark A. Musen, Casey Best, Ray W. Fergerson, Neil A. Ernst: Jambalaya: an interactive environment for exploring ontologies. IUI 2002: 239-239

Martin Frank, Natasha F. Noy, Steffen Staab (Eds.): Proceedings of the WWW2002 International Workshop on the Semantic Web, Hawaii, May 7, 2002. CEUR Workshop Proceedings 55, CEUR-WS.org 2002

Natalya Fridman Noy, Michael Sintek, Stefan Decker, Monica Crubézy, Ray W. Fergerson, Mark A. Musen: Creating Semantic Web Contents with Protégé-2000. IEEE Intelligent Systems 16(2): 60-71 (2001)

Natalya Fridman Noy, Carole D. Hafner: Ontological Foundations for Experimental Science Knowledge Bases. Applied Artificial Intelligence 14(6): 565-618 (2000)

Natalya Fridman Noy, Mark A. Musen: PROMPT: Algorithm and Tool for Automated Ontology Merging and Alignment. AAAI/IAAI 2000: 450-455

Natalya Fridman Noy, Ray W. Fergerson, Mark A. Musen: The Knowledge Model of Protégé-2000: Combining Interoperability and Flexibility. EKAW 2000: 17-32

Natalya Fridman Noy, Carole D. Hafner: Representing Scientific Experiments: Implications for Ontology Design and Knowledge Sharing. AAAI/IAAI 1998: 615-622

Natalya Fridman Noy, Carole D. Hafner: The State of the Art in Ontology Design: A Survey and Comparative Review. AI Magazine 18(3): 53-74 (1997)

Carole D. Hafner, Natalya Fridman Noy: Ontological Foundations for Biology Knowledge Models. ISMB 1996: 78-87

Robert P. Futrelle, Natalya Fridman Noy: Principles and Tools for Authoring Knowledge-Rich Documents. DEXA Workshop 1995: 357-362

Carole D. Hafner, Kenneth Baclawski, Robert P. Futrelle, Natalya Fridman Noy, Shobana Sampath: Creating a Knowledge Base of Biological Research Papers. ISMB 1994: 147-155

Kenneth Baclawski, Robert P. Futrelle, Natalya Fridman Noy, Maurice J. Pescitelli: Database Techniques for Biological Materials and Methods. ISMB 1993: 21-28