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Ruth Nussinov
2010 – today
- 2013
[j50]David Zanuy, Francisco J. Sayago, Guillem Revilla-López, Gema Ballano, Lilach Agemy, Venkata Ramana Kotamraju, Ana I. Jiménez, Carlos Cativiela, Ruth Nussinov, April M. Sawvel, Galen Stucky, Erkki Ruoslahti, Carlos Alemán: Engineering strategy to improve peptide analogs: from structure-based computational design to tumor homing. Journal of Computer-Aided Molecular Design 27(1): 31-43 (2013)- 2012
- [j49]Rosemary Dickin, Chris James Hall, Laura K. Taylor, Andrew M. Collings, Ruth Nussinov, Philip E. Bourne: A Review of 2011 for PLoS Computational Biology. PLoS Computational Biology 8(1) (2012)
- [j48]Elif Nihal Korkmaz, Ruth Nussinov, Türkan Haliloglu: Conformational Control of the Binding of the Transactivation Domain of the MLL Protein and c-Myb to the KIX Domain of CREB. PLoS Computational Biology 8(3) (2012)
- [j47]Ruth Nussinov: A Future Vision for PLOS Computational Biology. PLoS Computational Biology 8(10) (2012)
- [i1]Peter Csermely, Tamás Korcsmáros, Huba J. M. Kiss, Gabor London, Ruth Nussinov: Structure and dynamics of molecular networks: A novel paradigm of drug discovery. A comprehensive review. CoRR abs/1210.0330 (2012)
- 2011
- [j46]Ilona Kifer, Ruth Nussinov, Haim J. Wolfson: GOSSIP: a method for fast and accurate global alignment of protein structures. Bioinformatics 27(7): 925-932 (2011)
- [j45]Augustin Luna, Evrim I. Karac, Margot Sunshine, Lucas Chang, Ruth Nussinov, Mirit I. Aladjem, Kurt W. Kohn: A Formal MIM Specification and Tools for the Common Exchange of MIM Diagrams: an XML-Based Format, an API, and a Validation Method. BMC Bioinformatics 12: 167 (2011)
- [j44]David Curcó, David Zanuy, Ruth Nussinov, Carlos Alemán: A simulation strategy for the atomistic modeling of flexible molecules covalently tethered to rigid surfaces: Application to peptides. Journal of Computational Chemistry 32(4): 607-619 (2011)
- [j43]Rosemary Dickin, Cecy Marden, Andrew M. Collings, Ruth Nussinov, Philip E. Bourne: A Review of 2010 for PLoS Computational Biology. PLoS Computational Biology 7(1) (2011)
- [j42]Yongping Pan, Ruth Nussinov: The Role of Response Elements Organization in Transcription Factor Selectivity: The IFN-β Enhanceosome Example. PLoS Computational Biology 7(6) (2011)
- 2010
- [j41]Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov: CCRXP: exploring clusters of conserved residues in protein structures. Nucleic Acids Research 38(Web-Server-Issue): 398-401 (2010)
- [j40]Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson: FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking. Nucleic Acids Research 38(Web-Server-Issue): 457-461 (2010)
- [j39]Yongping Pan, Ruth Nussinov: Lysine120 Interactions with p53 Response Elements can Allosterically Direct p53 Organization. PLoS Computational Biology 6(8) (2010)
- [j38]Melda Tozluoglu, Ezgi Karaca, Ruth Nussinov, Türkan Haliloglu: A Mechanistic View of the Role of E3 in Sumoylation. PLoS Computational Biology 6(8) (2010)
2000 – 2009
- 2009
- [j37]Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov: A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Briefings in Bioinformatics 10(3): 217-232 (2009)
- [j36]Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson: RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. Nucleic Acids Research 37(Database-Issue): 369-373 (2009)
- [j35]Yongping Pan, Ruth Nussinov: Cooperativity Dominates the Genomic Organization of p53-Response Elements: A Mechanistic View. PLoS Computational Biology 5(7) (2009)
- [j34]Jin Liu, Ruth Nussinov: The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation. PLoS Computational Biology 5(10) (2009)
- 2008
- [j33]Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson: Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. Journal of Computational Biology 15(7): 737-754 (2008)
- [j32]Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Dan Halperin, Ruth Nussinov: MolAxis: a server for identification of channels in macromolecules. Nucleic Acids Research 36(Web-Server-Issue): 210-215 (2008)
- [j31]Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson: PharmaGist: a webserver for ligand-based pharmacophore detection. Nucleic Acids Research 36(Web-Server-Issue): 223-228 (2008)
- [j30]Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson: FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Research 36(Web-Server-Issue): 229-232 (2008)
- [j29]Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson: MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions. Nucleic Acids Research 36(Web-Server-Issue): 260-264 (2008)
- [c17]Ruth Nussinov, Tao Ju, Talapady Bhat, Jack Snoeyink, Karthik Ramani: Bio-geometry: challenges, approaches, and future opportunities in proteomics and drug discovery. Symposium on Solid and Physical Modeling 2008: 417-418
- 2007
- [j28]Zengjian Hu, Donnell Bowen, William M. Southerland, Antonio del Sol, Yongping Pan, Ruth Nussinov, Buyong Ma: Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR. PLoS Computational Biology 3(6) (2007)
- [j27]Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson: EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps. IEEE/ACM Trans. Comput. Biology Bioinform. 4(1): 28-39 (2007)
- [c16]Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson: Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. RECOMB 2007: 412-429
- 2006
- [j26]Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov: A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinformatics 22(11): 1343-1352 (2006)
- [j25]Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson: The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection. Journal of Computational Biology 13(2): 407-428 (2006)
- [j24]Oranit Dror, Ruth Nussinov, Haim J. Wolfson: The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Research 34(Web-Server-Issue): 412-415 (2006)
- [j23]Chung-Jung Tsai, Jie Zheng, Ruth Nussinov: Designing a Nanotube Using Naturally Occurring Protein Building Blocks. PLoS Computational Biology 2(4) (2006)
- 2005
- [j22]Yuval Inbar, Haim J. Wolfson, Ruth Nussinov: Multiple Docking for Protein Structure Prediction. I. J. Robotic Res. 24(2-3): 131-150 (2005)
- [j21]Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy: PRISM: protein interactions by structural matching. Nucleic Acids Research 33(Web-Server-Issue): 331-336 (2005)
- [j20]Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson: SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. Nucleic Acids Research 33(Web-Server-Issue): 337-341 (2005)
- [j19]Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson: PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Research 33(Web-Server-Issue): 363-367 (2005)
- [c15]Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson: MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. CompLife 2005: 91-103
- [c14]Oranit Dror, Ruth Nussinov, Haim J. Wolfson: ARTS: alignment of RNA tertiary structures. ECCB/JBI 2005: 53
- [c13]Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson: Recognition of Binding Patterns Common to a Set of Protein Structures. RECOMB 2005: 440-455
- [c12]Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson: Discovery of Protein Substructures in EM Maps. WABI 2005: 423-434
- 2004
- [j18]Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson: FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions. Journal of Computational Biology 11(1): 83-106 (2004)
- [j17]Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson: BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Research 32(Web-Server-Issue): 503-507 (2004)
- [c11]Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson: Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. WABI 2004: 194-205
- 2003
- [c10]Oranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson: MASS: multiple structural alignment by secondary structures. ISMB (Supplement of Bioinformatics) 2003: 95-104
- [c9]Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson: Protein structure prediction via combinatorial assembly of sub-structural units. ISMB (Supplement of Bioinformatics) 2003: 158-168
- 2002
- [c8]Dina Duhovny, Ruth Nussinov, Haim J. Wolfson: Efficient Unbound Docking of Rigid Molecules. WABI 2002: 185-200
- [c7]Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson: MultiProt - A Multiple Protein Structural Alignment Algorithm. WABI 2002: 235-250
- 2001
- [j16]Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov: Protein flexibility and electrostatic interactions. IBM Journal of Research and Development 45(3): 499-512 (2001)
- [j15]Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov: A hierarchical, building-block-based computational scheme for protein structure prediction. IBM Journal of Research and Development 45(3): 513-524 (2001)
- [j14]Nathaniel Leibowitz, Ruth Nussinov, Haim J. Wolfson: MUSTA - A General, Efficient, Automated Method for Multiple Structure Alignment and Detection of Common Motifs: Application to Proteins. Journal of Computational Biology 8(2): 93-121 (2001)
- 2000
- [c6]Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson: Alignment of Flexible Protein Structures. ISMB 2000: 329-343
1990 – 1999
- 1999
- [c5]Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson: Multiple Structural Alignment and Core Detection by Geometric Hashing. ISMB 1999: 169-177
- 1998
- [j13]Bilha Sandak, Ruth Nussinov, Haim J. Wolfson: A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility. Journal of Computational Biology 5(4): 631-654 (1998)
- [c4]Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson: [Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces. German Conference on Bioinformatics 1998
- 1996
- [c3]Bilha Sandak, Ruth Nussinov, Haim J. Wolfson: Docking of Conformationally Flexible Proteins. CPM 1996: 271-287
- 1995
- [j12]Bilha Sandak, Ruth Nussinov, Haim J. Wolfson: An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching. Computer Applications in the Biosciences 11(1): 87-99 (1995)
- 1993
- [c2]Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson: 3-D Docking of Protein Molecules. CPM 1993: 20-34
- 1992
- [c1]Daniel Fischer, Ruth Nussinov, Haim J. Wolfson: 3-D Substructure Matching in Protein Molecules. CPM 1992: 136-150
- 1991
- [j11]Ruth Nussinov: Compositional variations in DNA sequences. Computer Applications in the Biosciences 7(3): 287-293 (1991)
- [j10]Ruth Nussinov: Signals in DNA sequences and their potential properties. Computer Applications in the Biosciences 7(3): 295-299 (1991)
1980 – 1989
- 1989
- [j9]Shu-Yun Le, J. Owens, Ruth Nussinov, Jih-H. Chen, Bruce A. Shapiro, Jacob V. Maizel: RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. Computer Applications in the Biosciences 5(3): 205-210 (1989)
- 1988
- [j8]Gad M. Landau, Uzi Vishkin, Ruth Nussinov: Locating alignments with k differences for nucleotide and amino acid sequences. Computer Applications in the Biosciences 4(1): 19-24 (1988)
- [j7]J. Owens, D. Chatterjee, Ruth Nussinov, Andrzej K. Konopka, Jacob V. Maizel: A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features. Computer Applications in the Biosciences 4(1): 73-77 (1988)
- [j6]Shu-Yun Le, Jih-H. Chen, Ruth Nussinov, Jacob V. Maizel: An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors. Computer Applications in the Biosciences 4(3): 337-344 (1988)
- 1986
- [j5]Gad M. Landau, Uzi Vishkin, Ruth Nussinov: An efficient string matching algorithm with k differences for nucleotide and amino acid sequences. Nucleic Acids Research 14(1): 31-46 (1986)
- [j4]Bruce A. Shapiro, Ruth Nussinov, Lewis E. Lipkin, Jacob V. Maizel: A sequence analysis system encompassing rules for DNA helical distortion. Nucleic Acids Research 14(1): 75-86 (1986)
- 1984
- [j3]Eliahu Comay, Ruth Nussinov, Oded Comay: An accelerated algorithm for calculating the secondary structure of single stranded RNAs. Nucleic Acids Research 12(1): 53-66 (1984)
- 1982
- [j2]Ruth Nussinov, I. Tinoco Jr., A. B. Jacobson: Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA. Nucleic Acids Research 10(1): 341-349 (1982)
- [j1]Ruth Nussinov, I. Tinoco Jr., A. B. Jacobson: Secondary structure model for the complete simian virus 50 late precursor mRNA. Nucleic Acids Research 10(1): 351-363 (1982)
Coauthor Index
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last updated on 2013-02-26 20:12 CET by the dblp team