Aleksey Y. Ogurtsov

Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov, Mikhail A. Roytberg: Analysis of internal loops within the RNA secondary structure in almost quadratic time. Bioinformatics 22(11): 1317-1324 (2006)

Svetlana A. Shabalina, Alexey N. Spiridonov, Aleksey Y. Ogurtsov: Computational models with thermodynamic and composition features improve siRNA design. BMC Bioinformatics 7: 65 (2006)

Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemtsov, Raymond F. Gesteland, Senya Matsufuji, John F. Atkins, Aleksey Y. Ogurtsov, Svetlana A. Shabalina: Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome. BMC Bioinformatics 5: 44 (2004)

Mikhail A. Roytberg, Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov: A hierarchical approach to aligning collinear regions of genomes. Bioinformatics 18(12): 1673-1680 (2002)

Aleksey Y. Ogurtsov, Mikhail A. Roytberg, Svetlana A. Shabalina, Alexey S. Kondrashov: OWEN: aligning long collinear regions of genomes. Bioinformatics 18(12): 1703-1704 (2002)

N. N. Nazipova, Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Alexey S. Kondrashov, Mikhail A. Roytberg, G. V. Buryakov, S. E. Vernoslov: SAMSON: a software package for the biopolymer primary structure analysis. Computer Applications in the Biosciences 11(4): 423-426 (1995)