Aïda Ouangraoua

Julien Allali, Cédric Saule, Cedric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet: BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. Adv. Bioinformatics 2012 (2012)

Antoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré: Genome Halving by Block Interchange. BIOINFORMATICS 2012: 58-65

Aïda Ouangraoua, Mathieu Raffinot: Faster and Simpler Minimal Conflicting Set Identification - (Extended Abstract). CPM 2012: 41-55

Aïda Ouangraoua, Krister M. Swenson, Anne Bergeron: On the Comparison of Sets of Alternative Transcripts. ISBRA 2012: 201-212

Antoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré: Tandem Halving Problems by DCJ. WABI 2012: 417-429

Aïda Ouangraoua, Mathieu Raffinot: Faster and Simpler Minimal Conflicting Set Identification. CoRR abs/1201.5513 (2012)

Aïda Ouangraoua, Eric Tannier, Cedric Chauve: Reconstructing the architecture of the ancestral amniote genome. Bioinformatics 27(19): 2664-2671 (2011)

Antoine Thomas, Jean-Stéphane Varré, Aïda Ouangraoua: Genome dedoubling by DCJ and reversal. BMC Bioinformatics 12(S-9): S20 (2011)

Aïda Ouangraoua, Krister M. Swenson, Cedric Chauve: A 2-Approximation for the Minimum Duplication Speciation Problem. Journal of Computational Biology 18(9): 1041-1053 (2011)

Aïda Ouangraoua, Anne Bergeron, Krister M. Swenson: Theory and Practice of Ultra-Perfection. Journal of Computational Biology 18(9): 1219-1230 (2011)

Aïda Ouangraoua, Valentin Guignon, Sylvie Hamel, Cedric Chauve: A new algorithm for aligning nested arc-annotated sequences under arbitrary weight schemes. Theor. Comput. Sci. 412(8-10): 753-764 (2011)

Antoine Thomas, Aïda Ouangraoua, Jean-Stéphane Varré: Genome Halving by Block Interchange. CoRR abs/1107.1076 (2011)

Cedric Chauve, Haris Gavranovic, Aïda Ouangraoua, Eric Tannier: Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II. Journal of Computational Biology 17(9): 1097-1112 (2010)

Aïda Ouangraoua, Anne Bergeron: Combinatorial Structure of Genome Rearrangements Scenarios. Journal of Computational Biology 17(9): 1129-1144 (2010)

Aïda Ouangraoua, Anne Bergeron, Krister M. Swenson: Ultra-Perfect Sorting Scenarios. RECOMB-CG 2010: 50-61

Aïda Ouangraoua, Krister M. Swenson, Cedric Chauve: An Approximation Algorithm for Computing a Parsimonious First Speciation in the Gene Duplication Model. RECOMB-CG 2010: 290-301

Aïda Ouangraoua, Pascal Ferraro: A new constrained edit distance between quotiented ordered trees. J. Discrete Algorithms 7(1): 78-89 (2009)

Aïda Ouangraoua, Pascal Ferraro: A constrained edit distance algorithm between semi-ordered trees. Theor. Comput. Sci. 410(8-10): 837-846 (2009)

Aïda Ouangraoua, Frédéric Boyer, Andrew McPherson, Eric Tannier, Cedric Chauve: Prediction of Contiguous Regions in the Amniote Ancestral Genome. ISBRA 2009: 173-185

Aïda Ouangraoua, Anne Bergeron: Parking Functions, Labeled Trees and DCJ Sorting Scenarios. RECOMB-CG 2009: 24-35

Aïda Ouangraoua, Anne Bergeron: Parking functions, labeled trees and DCJ sorting scenarios. CoRR abs/0903.2499 (2009)

Cedric Chauve, Aïda Ouangraoua: A 3-approximation algorithm for computing a parsimonious first speciation in the gene duplication model. CoRR abs/0904.1645 (2009)

Aïda Ouangraoua, Pascal Ferraro, Laurent Tichit, Serge Dulucq: Local similarity between quotiented ordered trees. J. Discrete Algorithms 5(1): 23-35 (2007)