B. F. Francis Ouellette

Warren A. Cheung, B. F. Francis Ouellette, Wyeth W. Wasserman: Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs). BMC Bioinformatics 13: 249 (2012)

Michelle D. Brazas, David S. Yim, Winston Yeung, B. F. Francis Ouellette: A decade of web server updates at the bioinformatics links directory: 2003-2012. Nucleic Acids Research 40(Web-Server-Issue): 3-12 (2012)

Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki: Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research 39(Database-Issue): 7-10 (2011)

Michelle D. Brazas, David S. Yim, Joseph Tadashi Yamada, B. F. Francis Ouellette: The 2011 bioinformatics links directory update: more resources, tools and databases and features to empower the bioinformatics community. Nucleic Acids Research 39(Web-Server-Issue): 3-7 (2011)

Kelvin Xi Zhang, B. F. Francis Ouellette: CAERUS: Predicting CAncER oUtcomeS Using Relationship between Protein Structural Information, Protein Networks, Gene Expression Data, and Mutation Data. PLoS Computational Biology 7(3) (2011)

Kelvin Xi Zhang, B. F. Francis Ouellette: Pandora, a PAthway and Network DiscOveRy Approach based on common biological evidence. Bioinformatics 26(4): 529-535 (2010)

Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette: Providing web servers and training in Bioinformatics: 2010 update on the Bioinformatics Links Directory. Nucleic Acids Research 38(Web-Server-Issue): 3-6 (2010)

Kelvin Xi Zhang, B. F. Francis Ouellette: GAIA: a gram-based interaction analysis tool - an approach for identifying interacting domains in yeast. BMC Bioinformatics 10(S-1) (2009)

Michelle D. Brazas, Joseph Tadashi Yamada, B. F. Francis Ouellette: Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory. Nucleic Acids Research 37(Web-Server-Issue): 3-5 (2009)

Michelle D. Brazas, Joanne A. Fox, Timothy Brown, Scott McMillan, B. F. Francis Ouellette: Keeping pace with the data: 2008 update on the Bioinformatics Links Directory. Nucleic Acids Research 36(Web-Server-Issue): 2-4 (2008)

Kelvin Xi Zhang, B. F. Francis Ouellette: A new approach to predict interactions between integral membrane proteins in yeast. IEEE Congress on Evolutionary Computation 2008: 1801-1806

Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette: Conducting Research on the Web: 2007 Update for the Bioinformatics Links Directory. Nucleic Acids Research 35(Web-Server-Issue): 3-5 (2007)

Nawar Malhis, Kelvin Xi Zhang, B. F. Francis Ouellette: Detecting Protein-Domains DNA-Motifs Association in Saccharomyces cerevisiae Regulatory Networks. AINA Workshops (1) 2007: 639-644

Joanne A. Fox, Scott McMillan, B. F. Francis Ouellette: A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory. Nucleic Acids Research 34(Web-Server-Issue): 3-5 (2006)

Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. Yuen, John Ling, B. F. Francis Ouellette: Atlas - a data warehouse for integrative bioinformatics. BMC Bioinformatics 6: 34 (2005)

Perseus I. Missirlis, Carri-Lyn R. Mead, Stefanie L. Butland, B. F. Francis Ouellette, Rebecca S. Devon, Blair R. Leavitt, Robert A. Holt: Satellog: A database for the identification and prioritization of satellite repeats in disease association studies. BMC Bioinformatics 6: 145 (2005)

C. Alfarano, C. E. Andrade, K. Anthony, N. Bahroos, M. Bajec, K. Bantoft, Doron Betel, B. Bobechko, K. Boutilier, E. Burgess, K. Buzadzija, R. Cavero, C. D'Abreo, Ian M. Donaldson, D. Dorairajoo, M. J. Dumontier, M. R. Dumontier, V. Earles, R. Farrall, Howard J. Feldman, E. Garderman, Y. Gong, R. Gonzaga, V. Grytsan, E. Gryz, V. Gu, E. Haldorsen, A. Halupa, R. Haw, A. Hrvojic, L. Hurrell, Ruth Isserlin, F. Jack, F. Juma, A. Khan, T. Kon, S. Konopinsky, V. Le, E. Lee, S. Ling, M. Magidin, J. Moniakis, J. Montojo, S. Moore, B. Muskat, I. Ng, J. P. Paraiso, B. Parker, Greg Pintilie, R. Pirone, John J. Salama, S. Sgro, T. Shan, Y. Shu, J. Siew, D. Skinner, Kevin A. Snyder, R. Stasiuk, D. Strumpf, Brigitte Tuekam, S. Tao, Z. Wang, M. White, R. Willis, Cheryl Wolting, S. Wong, A. Wrong, C. Xin, R. Yao, B. Yates, Shudong Zhang, K. Zheng, Tony Pawson, B. F. Francis Ouellette, Christopher W. V. Hogue: The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Research 33(Database-Issue): 418-424 (2005)

Joanne A. Fox, Stefanie L. Butland, Scott McMillan, Graeme Campbell, B. F. Francis Ouellette: The Bioinformatics Links Directory: a Compilation of Molecular Biology Web Servers. Nucleic Acids Research 33(Web-Server-Issue): 3-24 (2005)

Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette: Pegasys: software for executing and integrating analyses of biological sequences. BMC Bioinformatics 5: 40 (2004)

Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette: GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results. Bioinformatics 19(10): 1296-1297 (2003)

Sanja Rogic, B. F. Francis Ouellette, Alan K. Mackworth: Improving gene recognition accuracy by combining predictions from two gene-finding programs. Bioinformatics 18(8): 1034-1045 (2002)

Gary D. Bader, Ian M. Donaldson, Cheryl Wolting, B. F. Francis Ouellette, Tony Pawson, Christopher W. V. Hogue: BIND - The Biomolecular Interaction Network Database. Nucleic Acids Research 29(1): 242-245 (2001)

Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette, Barbara A. Rapp, David L. Wheeler: GenBank. Nucleic Acids Research 27(1): 12-17 (1999)

Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette: GenBank. Nucleic Acids Research 26(1): 1-7 (1998)