Tony Pan

George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz: Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines. Parallel Computing 39(4-5): 189-211 (2013)

Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz: Integrated morphologic analysis for the identification and characterization of disease subtypes. JAMIA 19(2): 317-323 (2012)

Bradley James Erickson, Tony Pan, Daniel S. Marcus: Whitepapers on Imaging Infrastructure for Research - Part 1: General Workflow Considerations. J. Digital Imaging 25(4): 449-453 (2012)

Daniel S. Marcus, Bradley James Erickson, Tony Pan: Imaging Infrastructure for Research. Part 2. Data Management Practices. J. Digital Imaging 25(5): 566-569 (2012)

Tony Pan, Bradley James Erickson, Daniel S. Marcus: Whitepapers on Imaging Infrastructure for Research Part Three: Security and Privacy. J. Digital Imaging 25(6): 692-702 (2012)

Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz: Digital Pathology: Data-Intensive Frontier in Medical Imaging. Proceedings of the IEEE 100(4): 991-1003 (2012)

George Teodoro, Tahsin M. Kurç, Tony Pan, Lee A. D. Cooper, Jun Kong, Patrick M. Widener, Joel H. Saltz: Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems. IPDPS 2012: 1093-1104

George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz: Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines. CoRR abs/1209.3314 (2012)

George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz: High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms. CoRR abs/1209.3332 (2012)

David J. Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A. Goodell, Michael Reiss, Fusheng Wang, Tahsin M. Kurç, Tony Pan, Ashish Sharma, Joel H. Saltz: ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. JAMIA 18(4): 403-415 (2011)

Jun Kong, Lee A. D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Ashish Sharma, Tony Pan, Erwin G. Van Meir, Tahsin M. Kurç, Carlos S. Moreno, Joel H. Saltz, Daniel J. Brat: Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. IEEE Trans. Biomed. Engineering 58(12): 3469-3474 (2011)

Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Sharath R. Cholleti, Tony C. Pan, Patrick M. Widener, Ashish Sharma, Tom Mikkelsen, Adam E. Flanders, Daniel L. Rubin, Erwin G. Van Meir, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz: An Integrative Approach for In Silico Glioma Research. IEEE Trans. Biomed. Engineering 57(10): 2617-2621 (2010)

Fusheng Wang, Tahsin M. Kurç, Patrick M. Widener, Tony Pan, Jun Kong, Lee A. D. Cooper, David A. Gutman, Ashish Sharma, Sharath R. Cholleti, Vijay Kumar: High-Performance Systems for in Silico Microscopy Imaging Studies. DILS 2010: 3-18

Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee A. D. Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran: High Performance Computing Techniques for Scaling Image Analysis Workflows. PARA (2) 2010: 67-77

Tahsin M. Kurç, Shannon Hastings, Vijay S. Kumar, Stephen Langella, Ashish Sharma, Tony Pan, Scott Oster, David Ervin, Justin Permar, Sivaramakrishnan Narayanan, Yolanda Gil, Ewa Deelman, Mary W. Hall, Joel H. Saltz: HPC and Grid Computing for Integrative Biomedical Research. IJHPCA 23(3): 252-264 (2009)

Ashish Sharma, Tony Pan, Berkant Barla Cambazoglu, Metin N. Gurcan, Tahsin M. Kurç, Joel H. Saltz: VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid. J. Digital Imaging 22(1): 1-10 (2009)

Joel H. Saltz, Tahsin M. Kurç, Shannon Hastings, Stephen Langella, Scott Oster, David Ervin, Ashish Sharma, Tony Pan, Metin N. Gurcan, Justin Permar, Renato Ferreira, Philip R. O. Payne, Ümit V. Çatalyürek, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Ravi K. Madduri, Ian T. Foster, Subhasree Madhavan, Kenneth H. Buetow, Krishnakant Shanbhag, Eliot L. Siegel: e-Science, caGrid, and Translational Biomedical Research. IEEE Computer 41(11): 58-66 (2008)

George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz: A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. International Journal of Parallel Programming 36(2): 250-266 (2008)

Stephen Langella, Shannon Hastings, Scott Oster, Tony Pan, Ashish Sharma, Justin Permar, David Ervin, Berkant Barla Cambazoglu, Tahsin M. Kurç, Joel H. Saltz: Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment. JAMIA 15(3): 363-373 (2008)

Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee A. D. Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang: An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. Journal of Biomedical Informatics 41(6): 863-873 (2008)

Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Tony C. Pan, Sunny K. Chow, Stephan Lamont, Maryann E. Martone, Joel H. Saltz: Large-Scale Biomedical Image Analysis in Grid Environments. IEEE Transactions on Information Technology in Biomedicine 12(2): 154-161 (2008)

Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Renato Ferreira, Justin Permar, Ashish Sharma, David Ervin, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç: Translational research design templates, Grid computing, and HPC. IPDPS 2008: 1-15

Richard Sharp, Randall Ridgway, Kishore Mosaliganti, Pamela Wenzel, Tony Pan, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz: Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data. Computing in Science and Engineering 9(1): 38-47 (2007)

Metin N. Gurcan, Tony Pan, Ashish Sharma, Tahsin M. Kurç, Scott Oster, Stephen Langella, Shannon Hastings, Khan M. Siddiqui, Eliot L. Siegel, Joel H. Saltz: GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support. J. Digital Imaging 20(2): 160-171 (2007)

Antonio Ruiz, Manuel Ujaldon, Jose Antonio Andrades, Jose Becerra, Kun Huang, Tony Pan, Joel H. Saltz: The GPU on biomedical image processing for color and phenotype analysis. BIBE 2007: 1124-1128

Jeff Prescott, Matthew Clary, Gregory J. Wiet, Tony Pan, Kun Huang: Automatic registration of large set of microscopic images using high-level features. ISBI 2006: 1284-1287

George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz: A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. SBAC-PAD 2006: 81-90

Shannon Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Joel H. Saltz: Application of Information Technology: A Grid-Based Image Archival and Analysis System. JAMIA 12(3): 286-295 (2005)

Shannon Hastings, Matheus Ribeiro, Stephen Langella, Scott Oster, Ümit V. Çatalyürek, Tony Pan, Kun Huang, Renato Ferreira, Joel H. Saltz, Tahsin M. Kurç: XML database support for distributed execution of data-intensive scientific workflows. SIGMOD Record 34(3): 50-55 (2005)

Benjamin Rutt, Vijay S. Kumar, Tony Pan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Yujun Wang: Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying. CLUSTER 2005: 1-10

Ümit V. Çatalyürek, Shannon Hastings, Kun Huang, Vijay S. Kumar, Tahsin M. Kurç, Stephen Langella, Sivaramakrishnan Narayanan, Scott Oster, Tony Pan, Benjamin Rutt, Xi Zhang, Joel H. Saltz: Supporting Large Scale Medical and Scientific Datasets. PARCO 2005: 3-14

Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Daniel Janies, Joel H. Saltz: Grid-based management of biomedical data using an XML-based distributed data management system. SAC 2005: 105-109

Xi Zhang, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz: Serving queries to multi-resolution datasets on disk-based storage clusters. CCGRID 2004: 490-498

Matheus Ribeiro, Tahsin M. Kurç, Tony Pan, Kun Huang, Ümit V. Çatalyürek, Xi Zhang, Stephen Langella, Shannon Hastings, Scott Oster, Renato Ferreira, Joel H. Saltz: Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data. High Performance Computing Workshop 2004: 403-422

Xi Zhang, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Pete Wyckoff, Joel H. Saltz: Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms. HPDC 2004: 4-13

Shannon Hastings, Tahsin M. Kurç, Stephen Langella, Ümit V. Çatalyürek, Tony Pan, Joel H. Saltz: Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications. CCGRID 2003: 36-43