Jason A. Papin

Paul A. Jensen, Jason A. Papin: Functional integration of a metabolic network model and expression data without arbitrary thresholding. Bioinformatics 27(4): 541-547 (2011)

Matthew A. Oberhardt, Jacek Puchalka, Vítor A. P. Martins dos Santos, Jason A. Papin: Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis. PLoS Computational Biology 7(3) (2011)

Erwin P. Gianchandani, Andrew R. Joyce, Bernhard O. Palsson, Jason A. Papin: Functional States of the Genome-Scale Escherichia Coli Transcriptional Regulatory System. PLoS Computational Biology 5(6) (2009)

Brian J. Schmidt, Jason A. Papin, Michael B. Lawrence: Nano-motion Dynamics are Determined by Surface-Tethered Selectin Mechanokinetics and Bond Formation. PLoS Computational Biology 5(12) (2009)

Kristen A. Wieghaus, Erwin P. Gianchandani, Mikell A. Paige, Milton L. Brown, Edward A. Botchwey, Jason A. Papin: Novel pathway compendium analysis elucidates mechanism of pro-angiogenic synthetic small molecule. Bioinformatics 24(20): 2384-2390 (2008)

Erwin P. Gianchandani, Matthew A. Oberhardt, Anthony P. Burgard, Costas D. Maranas, Jason A. Papin: Predicting biological system objectives de novo from internal state measurements. BMC Bioinformatics 9 (2008)

Jong Min Lee, Erwin P. Gianchandani, James A. Eddy, Jason A. Papin: Dynamic Analysis of Integrated Signaling, Metabolic, and Regulatory Networks. PLoS Computational Biology 4(5) (2008)

Jacek Puchalka, Matthew A. Oberhardt, Miguel Godinho, Agata Bielecka, Daniela Regenhardt, Kenneth N. Timmis, Jason A. Papin, Vítor A. P. Martins dos Santos: Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology. PLoS Computational Biology 4(10) (2008)

Jong Min Lee, Erwin P. Gianchandani, Jason A. Papin: Flux balance analysis in the era of metabolomics. Briefings in Bioinformatics 7(2): 140-150 (2006)

Shayn M. Peirce, Thomas C. Skalak, Jason A. Papin: Multiscale biosystems integration: Coupling intracellular network analysis with tissue-patterning simulations. IBM Journal of Research and Development 50(6): 601-616 (2006)

Erwin P. Gianchandani, Jason A. Papin, Nathan D. Price, Andrew R. Joyce, Bernhard Ø. Palsson: Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems. PLoS Computational Biology 2(8) (2006)