Itsik Pe'er

Yufeng Shen, Ruijie Song, Itsik Pe'er: Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association. Bioinformatics 27(14): 1995-1997 (2011)

Yufeng Shen, Yiwei Gu, Itsik Pe'er: A Hidden Markov Model for Copy Number Variant prediction from whole genome resequencing data. BMC Bioinformatics 12(S-6): S4 (2011)

Manu N. Setty, Alexander Gusev, Itsik Pe'er: HLA Type Inference via Haplotypes Identical by Descent. Journal of Computational Biology 18(3): 483-493 (2011)

Arthi Ramachandran, Mariann Micsinai, Itsik Pe'er: CONDEX: Copy number detection in exome sequences. BIBM Workshops 2011: 87-93

Yufeng Shen, Yee Him Cheung, Shuang Wang, Itsik Pe'er: A parametric Bayesian method to test the association of rare variants. BIBM Workshops 2011: 137-143

Yufeng Shen, Yiwei Gu, Itsik Pe'er: Poster: A Hidden Markov Model for Copy Number Variant prediction from Whole genome resequencing data. ICCABS 2011: 260

Yufeng Shen, Ruijie Song, Itsik Pe'er: Workshop: Coverage tradeoffs and power estimation in the design of whole-genome sequencing experiments for detecting association. ICCABS 2011: 276

Ninad Dewal, Matthew L. Freedman, Thomas LaFramboise, Itsik Pe'er: Power to detect selective allelic amplification in genome-wide scans of tumor data. Bioinformatics 26(4): 518-528 (2010)

Manu N. Setty, Alexander Gusev, Itsik Pe'er: HLA Type Inference via Haplotypes Identical by Descent. RECOMB 2010: 491-505

Snehit Prabhu, Itsik Pe'er: Overlapping Pools for High Throughput Targeted Resequencing. RECOMB 2009: 270

Julia Stoyanovich, Itsik Pe'er: MutaGeneSys: estimating individual disease susceptibility based on genome-wide SNP array data. Bioinformatics 24(3): 440-442 (2008)

Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, Itsik Pe'er: Computational Problems in Perfect Phylogeny Haplotyping: Typing without Calling the Allele. IEEE/ACM Trans. Comput. Biology Bioinform. 5(1): 101-109 (2008)

Itsik Pe'er, Tal Pupko, Ron Shamir, Roded Sharan: Incomplete Directed Perfect Phylogeny. SIAM J. Comput. 33(3): 590-607 (2004)

Tamar Barzuza, Jacques S. Beckmann, Ron Shamir, Itsik Pe'er: Computational Problems in Perfect Phylogeny Haplotyping: Xor-Genotypes and Tag SNPs. CPM 2004: 14-31

Itsik Pe'er, Jacques S. Beckmann: Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples. RECOMB 2003: 237-246

Tal Pupko, Itsik Pe'er, Masami Hasegawa, Dan Graur, Nir Friedman: A branch-and-bound algorithm for the inference of ancestral amino-acid sequences when the replacement rate varies among sites: Application to the evolution of five gene families. Bioinformatics 18(8): 1116-1123 (2002)

Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan: On the Complexity of Positional Sequencing by Hybridization. Journal of Computational Biology 8(4): 361-371 (2002)

Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko: A Structural EM Algorithm for Phylogenetic Inference. Journal of Computational Biology 9(2): 331-353 (2002)

Itsik Pe'er, Ron Shamir, Roded Sharan: On the Generality of Phylogenies from Incomplete Directed Characters. SWAT 2002: 358-367

Nir Friedman, Matan Ninio, Itsik Pe'er, Tal Pupko: A structural EM algorithm for phylogenetic inference. RECOMB 2001: 132-140

Piotr Berman, Amir Ben-Dor, Itsik Pe'er, Roded Sharan, Ron Shamir: On the Complexity of Positional Sequencing by Hybridization. Electronic Colloquium on Computational Complexity (ECCC) 8(54) (2001)

Richard M. Karp, Itsik Pe'er, Ron Shamir: An Algorithm Combining Discrete and Continuous Methods for Optical Mapping. Journal of Computational Biology 7(5): 745-760 (2000)

Itsik Pe'er, Ron Shamir, Roded Sharan: Incomplete Directed Perfect Phylogeny. CPM 2000: 143-153

Itsik Pe'er, Ron Shamir: Spectrum Alignment: Efficient Resequencing by Hybridization. ISMB 2000: 260-268

Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Sharan: On the Complexity of Positional Sequencing by Hybridization. CPM 1999: 88-100

Richard M. Karp, Itsik Pe'er, Ron Shamir: An Algorithm Combining Discrete and Continuous Methods for Optical Mapping. ISMB 1999: 159-168

Itsik Pe'er, Ron Shamir: The median problems for breakpoints are NP-complete. Electronic Colloquium on Computational Complexity (ECCC) 5(71) (1998)

Itsik Pe'er, Ron Shamir: Realizing Interval Graphs with Size and Distance Constraints. SIAM J. Discrete Math. 10(4): 662-687 (1997)

Itsik Pe'er, Ron Shamir: Satisfiability Problems on Intervals and Unit Intervals. Theor. Comput. Sci. 175(2): 349-372 (1997)

Itsik Pe'er, Ron Shamir: Interval Graphs with Side (and Size) Constraints. ESA 1995: 142-154