Roger Perkins

Minjun Chen, Leming M. Shi, Reagan Kelly, Roger Perkins, Hong Fang, Weida Tong: Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project. BMC Bioinformatics 12(S-10): S3 (2011)

Don Ding, Lei Xu, Hong Fang, Huixiao Hong, Roger Perkins, Steve Harris, Edward D. Bearden, Leming Shi, Weida Tong: The EDKB: an established knowledge base for endocrine disrupting chemicals. BMC Bioinformatics 11(S-6): S5 (2010)

Huixiao Hong, Qilong Hong, Roger Perkins, Leming M. Shi, Hong Fang, Zhenqiang Su, Yvonne P. Dragan, James C. Fuscoe, Weida Tong: The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments. Journal of Computational Biology 16(12): 1671-1688 (2009)

Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong: Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. BMC Bioinformatics 9(S-9) (2008)

Leming M. Shi, Wendell D. Jones, Roderick V. Jensen, Stephen C. Harris, Roger Perkins, Federico M. Goodsaid, Lei Guo, Lisa J. Croner, Cecilie Boysen, Hong Fang, Feng Qian, Shashi Amur, Wenjun Bao, Catalin C. Barbacioru, Vincent Bertholet, Xiaoxi Megan Cao, Tzu-Ming Chu, Patrick J. Collins, Xiao-hui Fan, Felix W. Frueh: The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies. BMC Bioinformatics 9(S-9) (2008)

Zhenqiang Su, Huixiao Hong, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong: Very Important Pool (VIP) genes - an application for microarray-based molecular signatures. BMC Bioinformatics 9(S-9) (2008)

Zhenqiang Su, Huixiao Hong, Roger Perkins, Xueguang Shao, Wensheng Cai, Weida Tong: Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data. Computational Biology and Chemistry 31(1): 48-56 (2007)

Hongmei Sun, Hong Fang, Tao Chen, Roger Perkins, Weida Tong: GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data. BMC Bioinformatics 7(S-2) (2006)

Hong Fang, Weida Tong, Roger Perkins, Leming M. Shi, Huixiao Hong, X. Cao, Qian Xie, S. H. Yim, J. M. Ward, Henry C. Pitot, Yvonne P. Dragan: Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling. BMC Bioinformatics 6(S-2) (2005)

Huixiao Hong, Yvonne P. Dragan, Joshua Epstein, Candee Teitel, Bangzheng Chen, Qian Xie, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong: Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS). BMC Bioinformatics 6(S-2) (2005)

Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano: Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinformatics 6(S-2) (2005)

Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe: Microarray scanner calibration curves: characteristics and implications. BMC Bioinformatics 6(S-2) (2005)

Qian Xie, Luke D. Ratnasinghe, Huixiao Hong, Roger Perkins, Ze-Zhong Tang, Nan Hu, Philip R. Taylor, Weida Tong: Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method. BMC Bioinformatics 6(S-2) (2005)

Weida Tong, Huixiao Hong, Hong Fang, Qian Xie, Roger Perkins: Decision Forest: Combining the Predictions of Multiple Independent Decision Tree Models. Journal of Chemical Information and Computer Sciences 43(2): 525-531 (2003)

Leming M. Shi, Hong Fang, Weida Tong, Jie Wu, Roger Perkins, Robert M. Blair, William S. Branham, Stacey L. Dial, Carrie L. Moland, Daniel M. Sheehan: QSAR Models Using a Large Diverse Set of Estrogens. Journal of Chemical Information and Computer Sciences 41(1): 186-195 (2001)

Weida Tong, David R. Lowis, Roger Perkins, Yu Chen, William J. Welsh, Dean W. Goddette, Trevor W. Heritage, Daniel M. Sheehan: Evaluation of Quantitative Structure-Activity Relationship Methods for Large-Scale Prediction of Chemicals Binding to the Estrogen Receptor. Journal of Chemical Information and Computer Sciences 38(4): 669-677 (1998)