Nadia Pisanti

Giulia Menconi, Giovanni Battaglia, Roberto Grossi, Nadia Pisanti, Roberto Marangoni: Mobilomics in Saccharomyces cerevisiae strains. BMC Bioinformatics 14: 102 (2013)

Etienne Birmelé, Rui A. Ferreira, Roberto Grossi, Andrea Marino, Nadia Pisanti, Romeo Rizzi, Gustavo Sacomoto: Optimal Listing of Cycles and st-Paths in Undirected Graphs. SODA 2013: 1884-1896

Nadia Pisanti: From Discrete to Continuous: Turing's Morphogenesis. ERCIM News 2012(91) (2012)

Giulia Menconi, Giovanni Battaglia, Roberto Grossi, Nadia Pisanti, Roberto Marangoni: A Taste of Yeast Mobilomics. BIOINFORMATICS 2012: 271-274

Etienne Birmelé, Pierluigi Crescenzi, Rui A. Ferreira, Roberto Grossi, Vincent Lacroix, Andrea Marino, Nadia Pisanti, Gustavo Akio Tominaga Sacomoto, Marie-France Sagot: Efficient Bubble Enumeration in Directed Graphs. SPIRE 2012: 118-129

Etienne Birmelé, Rui A. Ferreira, Roberto Grossi, Andrea Marino, Nadia Pisanti, Romeo Rizzi, Gustavo Akio Tominaga Sacomoto, Marie-France Sagot: Optimal Listing of Cycles and st-Paths in Undirected Graphs. CoRR abs/1205.2766 (2012)

Roberto Grossi, Andrea Pietracaprina, Nadia Pisanti, Geppino Pucci, Eli Upfal, Fabio Vandin: MADMX: A Strategy for Maximal Dense Motif Extraction. Journal of Computational Biology 18(4): 535-545 (2011)

Giulia Menconi, Giovanni Battaglia, Roberto Grossi, Nadia Pisanti, Roberto Marangoni: Inferring Mobile Elements in S. Cerevisiae Strains. BIOINFORMATICS 2011: 131-136

Maria Federico, Nadia Pisanti: Removing Artifacts of Approximated Motifs. ITBAM 2011: 153-167

Maria Federico, Pierre Peterlongo, Nadia Pisanti, Marie-France Sagot: Finding Long and Multiple Repeats with Edit Distance. Stringology 2011: 83-97

Christian Böhm, Sami Khuri, Lenka Lhotská, Nadia Pisanti (Eds.): Information Technology in Bio- and Medical Informatics - Second International Conference, ITBAM 2011, Toulouse, France, August 29 - September 2, 2011. Proceedings. Lecture Notes in Computer Science 6865, Springer 2011, isbn 978-3-642-23207-7

Maria Federico, Pierre Peterlongo, Nadia Pisanti: An optimized filter for finding multiple repeats in DNA sequences. AICCSA 2010: 1-8

Pierre Peterlongo, Nicolas Schnel, Nadia Pisanti, Marie-France Sagot, Vincent Lacroix: Identifying SNPs without a Reference Genome by Comparing Raw Reads. SPIRE 2010: 147-158

Sami Khuri, Lenka Lhotská, Nadia Pisanti (Eds.): Information Technology in Bio- and Medical Informatics, ITBAM 2010, First International Conference, Bilbao, Spain, September 1-2, 2010. Proceedings. Lecture Notes in Computer Science 6266, Springer 2010, isbn 978-3-642-15019-7

Roberto Grossi, Andrea Pietracaprina, Nadia Pisanti, Geppino Pucci, Eli Upfal, Fabio Vandin: MADMX: A Novel Strategy for Maximal Dense Motif Extraction. CoRR abs/1002.0874 (2010)

Pierre Peterlongo, Gustavo Akio Tominaga Sacomoto, Alair Pereira do Lago, Nadia Pisanti, Marie-France Sagot: Lossless filter for multiple repeats with bounded edit distance. Algorithms for Molecular Biology 4 (2009)

Nadia Pisanti, Henry Soldano, Mathilde Carpentier, Joël Pothier: A Relational Extension of the Notion of Motifs: Application to the Common 3D Protein Substructures Searching Problem. Journal of Computational Biology 16(12): 1635-1660 (2009)

Giovanni Battaglia, Davide Cangelosi, Roberto Grossi, Nadia Pisanti: Masking patterns in sequences: A new class of motif discovery with don't cares. Theor. Comput. Sci. 410(43): 4327-4340 (2009)

Maria Federico, Nadia Pisanti: Suffix tree characterization of maximal motifs in biological sequences. Theor. Comput. Sci. 410(43): 4391-4401 (2009)

Giovanni Battaglia, Roberto Grossi, Roberto Marangoni, Nadia Pisanti: Mining Biological Sequences with Masks. DEXA Workshops 2009: 193-197

Roberto Grossi, Andrea Pietracaprina, Nadia Pisanti, Geppino Pucci, Eli Upfal, Fabio Vandin: MADMX: A Novel Strategy for Maximal Dense Motif Extraction. WABI 2009: 362-374

Pierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Alair Pereira do Lago, Marie-France Sagot: Lossless filter for multiple repetitions with Hamming distance. J. Discrete Algorithms 6(3): 497-509 (2008)

Maria Federico, Nadia Pisanti: Suffix Tree Characterization of Maximal Motifs in Biological Sequences. BIRD 2008: 456-465

Nadia Pisanti, Alexandra M. Carvalho, Laurent Marsan, Marie-France Sagot: RISOTTO: Fast Extraction of Motifs with Mismatches. LATIN 2006: 757-768

Costas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot: A first approach to finding common motifs with gaps. Int. J. Found. Comput. Sci. 16(6): 1145-1154 (2005)

Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot: Bases of Motifs for Generating Repeated Patterns with Wild Cards. IEEE/ACM Trans. Comput. Biology Bioinform. 2(1): 40-50 (2005)

Nadia Pisanti, Henry Soldano, Mathilde Carpentier: Incremental Inference of Relational Motifs with a Degenerate Alphabet. CPM 2005: 229-240

Pierre Peterlongo, Nadia Pisanti, Frédéric Boyer, Marie-France Sagot: Lossless Filter for Finding Long Multiple Approximate Repetitions Using a New Data Structure, the Bi-factor Array. SPIRE 2005: 179-190

Valentina Ciriani, Nadia Pisanti, Anna Bernasconi: Room allocation: a polynomial subcase of the quadratic assignment problem. Discrete Applied Mathematics 144(3): 263-269 (2004)

Costas S. Iliopoulos, James A. M. McHugh, Pierre Peterlongo, Nadia Pisanti, Wojciech Rytter, Marie-France Sagot: A First Approach to Finding Common Motifs With Gaps. Stringology 2004: 88-97

Nadia Pisanti, Roberto Marangoni, Paolo Ferragina, Antonio Frangioni, A. Savona, C. Pisanelli, Fabrizio Luccio: PaTre: A Method for Paralogy Trees Construction. Journal of Computational Biology 10(5): 791-802 (2003)

Nadia Pisanti, Maxime Crochemore, Roberto Grossi, Marie-France Sagot: A Basis of Tiling Motifs for Generating Repeated Patterns and Its Complexity for Higher Quorum. MFCS 2003: 622-631

Nadia Pisanti, Marie-France Sagot: Further Thoughts on the Syntenic Distance between Genomes. Algorithmica 34(2): 157-180 (2002)