Matthew R. Pocock

Goksel Misirli, Anil Wipat, Joseph Mullen, Katherine James, Matthew R. Pocock, Wendy Smith, Nick Allenby, Jennifer Hallinan: BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology. J. Integrative Bioinformatics 10(2) (2013)

Keith Flanagan, Sirintra Nakjang, Jennifer Hallinan, Colin Harwood, Robert P. Hirt, Matthew R. Pocock, Anil Wipat: Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud. J. Integrative Bioinformatics 9(2) (2012)

Jochen Weile, Matthew R. Pocock, Simon J. Cockell, Phillip W. Lord, James M. Dewar, Eva-Maria Holstein, Darren J. Wilkinson, David A. Lydall, Jennifer Hallinan, Anil Wipat: Customizable views on semantically integrated networks for systems biology. Bioinformatics 27(9): 1299-1306 (2011)

Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul J. P. Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José M. Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi: The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomedical Semantics 1: 8 (2010)

Simon J. Cockell, Jochen Weile, Phillip W. Lord, Claire Wipat, Dmytro Andriychenko, Matthew R. Pocock, Darren J. Wilkinson, Malcolm Young, Anil Wipat: An integrated dataset for in silico drug discovery. J. Integrative Bioinformatics 7(3) (2010)

Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew R. Pocock, Christopher J. Rawlings: Analysis and Visualisation of RDF Resources in Ondex. SWAT4LS 2010

Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew R. Pocock, Christopher J. Rawlings: Analysis and visualisation of RDF resources in Ondex. CoRR abs/1012.1661 (2010)

Allyson L. Lister, Matthew R. Pocock, Morgan Taschuk, Anil Wipat: Saint: a lightweight integration environment for model annotation. Bioinformatics 25(22): 3026-3027 (2009)

Jennifer Hallinan, Matthew R. Pocock, Stephen G. Addinall, David A. Lydall, Anil Wipat: Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. CIBCB 2009: 228-236

Richard C. G. Holland, Thomas A. Down, Matthew R. Pocock, Andreas Prlic, David Huen, Keith James, Sylvain Foisy, Andreas Dräger, Andy Yates, Michael L. Heuer, Mark J. Schreiber: BioJava: an open-source framework for bioinformatics. Bioinformatics 24(18): 2096-2097 (2008)

Peter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell: Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data. BMC Bioinformatics 9 (2008)

Allyson L. Lister, Matthew R. Pocock, Anil Wipat: Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. J. Integrative Bioinformatics 4(3) (2007)

Yudong Sun, Anil Wipat, Matthew R. Pocock, P. A. Lee, Keith Flanagan, J. T. Worthington: Exploring Microbial Genome Sequences to Identify Protein Families on the Grid. IEEE Transactions on Information Technology in Biomedicine 11(4): 435-442 (2007)

Thomas M. Oinn, R. Mark Greenwood, Matthew Addis, M. Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole A. Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip W. Lord, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat, Chris Wroe: Taverna: lessons in creating a workflow environment for the life sciences. Concurrency and Computation: Practice and Experience 18(10): 1067-1100 (2006)

Duncan Hull, Katy Wolstencroft, Robert Stevens, Carole A. Goble, Matthew R. Pocock, Peter Li, Tom Oinn: Taverna: a tool for building and running workflows of services. Nucleic Acids Research 34(Web-Server-Issue): 729-732 (2006)

Yudong Sun, Anil Wipat, Matthew R. Pocock, P. A. Lee, P. Watson, Keith Flanagan, J. T. Worthington: A grid-based system for microbial genome comparison and analysis. CCGRID 2005: 977-984

Thomas M. Oinn, Matthew Addis, Justin Ferris, Darren Marvin, Martin Senger, R. Mark Greenwood, Tim Carver, Kevin Glover, Matthew R. Pocock, Anil Wipat, Peter Li: Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinformatics 20(17): 3045-3054 (2004)

Tim J. P. Hubbard, Daniel Barker, Ewan Birney, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas Down, Richard Durbin, Eduardo Eyras, James Gilbert, Martin Hammond, Lukasz Huminiecki, Arek Kasprzyk, Heikki Lehväslaiho, Philip Lijnzaad, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Matthew R. Pocock, Simon C. Potter, Alastair Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Michele E. Clamp: The Ensembl genome database project. Nucleic Acids Research 30(1): 38-41 (2002)

Matthew R. Pocock, Tim J. P. Hubbard: A browser for expression data. Bioinformatics 16(4): 402-403 (2000)

Matthew R. Pocock, Tim J. P. Hubbard, Ewan Birney: SPEM: a parser for EMBL style flat file database entries. Bioinformatics 14(9): 823-824 (1998)