Mihai Pop

Michael C. Schatz, Adam M. Phillippy, Daniel D. Sommer, Arthur L. Delcher, Daniela Puiu, Giuseppe Narzisi, Steven L. Salzberg, Mihai Pop: Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings in Bioinformatics 14(2): 213-224 (2013)

Henry C. Lin, Steve Goldstein, Lee Mendelowitz, Shiguo Zhou, Joshua Wetzel, David C. Schwartz, Mihai Pop: AGORA: Assembly Guided by Optical Restriction Alignment. BMC Bioinformatics 13: 189 (2012)

Chengxi Ye, Zhanshan (Sam) Ma, Charles H. Cannon, Mihai Pop, Douglas W. Yu: Exploiting sparseness in de novo genome assembly. BMC Bioinformatics 13(S-6): S1 (2012)

Mihai Pop: Review of parallel algorithms by Henri Casanova, Arnaud Legrand, and Yves Robert. SIGACT News 43(2): 11-14 (2012)

Bo Liu, Mihai Pop: Workshop: Comparative assembly of metagenomic sequences. ICCABS 2012: 1

Sorin Istrail, Ion I. Mandoiu, Mihai Pop, Sanguthevar Rajasekaran, John L. Spouge (Eds.): IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012, Las Vegas, NV, USA, February 23-25, 2012. IEEE 2012, isbn 978-1-4673-1320-9

Sergey Koren, Todd J. Treangen, Mihai Pop: Bambus 2: scaffolding metagenomes. Bioinformatics 27(21): 2964-2971 (2011)

Joshua Wetzel, Carl Kingsford, Mihai Pop: Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies. BMC Bioinformatics 12: 95 (2011)

Mohammadreza Ghodsi, Bo Liu, Mihai Pop: DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC Bioinformatics 12: 271 (2011)

Mihai Pop: Invited: Challenges in metagenomic assembly. ICCABS 2011: 9

Mihai Pop: Workshop: Can you assemble whole genomes from next generation sequencing data? ICCABS 2011: 273

Chengxi Ye, Zhanshan (Sam) Ma, Charles H. Cannon, Mihai Pop, Douglas W. Yu: SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph. CoRR abs/1106.2603 (2011)

Chengxi Ye, Charles H. Cannon, Zhanshan (Sam) Ma, Douglas W. Yu, Mihai Pop: SparseAssembler2: Sparse k-mer Graph for Memory Efficient Genome Assembly. CoRR abs/1108.3556 (2011)

Carl Kingsford, Michael C. Schatz, Mihai Pop: Assembly complexity of prokaryotic genomes using short reads. BMC Bioinformatics 11: 21 (2010)

James Robert White, Saket Navlakha, Niranjan Nagarajan, Mohammadreza Ghodsi, Carl Kingsford, Mihai Pop: Alignment and clustering of phylogenetic markers - implications for microbial diversity studies. BMC Bioinformatics 11: 152 (2010)

Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford: Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. Journal of Computational Biology 17(3): 503-516 (2010)

Bo Liu, Theodore Gibbons, Mohammadreza Ghodsi, Mihai Pop: MetaPhyler: Taxonomic profiling for metagenomic sequences. BIBM 2010: 95-100

Bo Liu, Mihai Pop: Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets. ISBRA 2010: 101-112

Mihai Pop: Genome assembly reborn: recent computational challenges. Briefings in Bioinformatics 10(4): 354-366 (2009)

Niranjan Nagarajan, Mihai Pop: Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. Journal of Computational Biology 16(7): 897-908 (2009)

Bo Liu, Mihai Pop: ARDB - Antibiotic Resistance Genes Database. Nucleic Acids Research 37(Database-Issue): 443-447 (2009)

James Robert White, Niranjan Nagarajan, Mihai Pop: Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Computational Biology 5(4) (2009)

Mohammadreza Ghodsi, Mihai Pop: Inexact Local Alignment Search over Suffix Arrays. BIBM 2009: 83-87

Saket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford: Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. RECOMB 2009: 400-417

James Robert White, Michael Roberts, James A. Yorke, Mihai Pop: Figaro: a novel statistical method for vector sequence removal. Bioinformatics 24(4): 462-467 (2008)

Niranjan Nagarajan, Timothy D. Read, Mihai Pop: Scaffolding and validation of bacterial genome assemblies using optical restriction maps. Bioinformatics 24(10): 1229-1235 (2008)

Daniel D. Sommer, Arthur L. Delcher, Steven L. Salzberg, Mihai Pop: Minimus: a fast, lightweight genome assembler. BMC Bioinformatics 8 (2007)

Mihai Pop: Shotgun Sequence Assembly. Advances in Computers 60: 193-248 (2004)

Mihai Pop, Adam M. Phillippy, Arthur L. Delcher, Steven Salzberg: Comparative genome assembly. Briefings in Bioinformatics 5(3): 237-248 (2004)

Mihai Pop, Steven Salzberg, Martin Shumway: Genome Sequence Assembly: Algorithms and Issues. IEEE Computer 35(7): 47-54 (2002)

Mihai Pop, Christian A. Duncan, Gill Barequet, Michael T. Goodrich, Wenjing Huang, Subodh Kumar: Efficient perspective-accurate silhouette computation and applications. Symposium on Computational Geometry 2001: 60-68

Gill Barequet, Christian A. Duncan, Michael T. Goodrich, Subodh Kumar, Mihai Pop: Efficient Perspective-Accurate Silhouette Computation. Symposium on Computational Geometry 1999: 417-418

S. Rao Kosaraju, Mihai Pop: De-amortization of Algorithms. COCOON 1998: 4-14

Alok Aggarwal, S. Rao Kosaraju, Mihai Pop: Drawing of Two-Dimensional Irregular Meshes. Graph Drawing 1998: 1-14