Sonja J. Prohaska

Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska: Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis. BMC Bioinformatics 12: 124 (2011)

Wolfgang Otto, Peter F. Stadler, Sonja J. Prohaska: Phylogenetic Footprinting and Consistent Sets of Local Aligments. CPM 2011: 118-131

Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska: Quantitative Comparison of Genomic-Wide Protein Domain Distributions. GCB 2010: 93-102

Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska: Detection of Protein Domains in Eukaryotic Genome Sequences. BSB 2010: 71-74

Axel Mosig, Türker Bíyíkoglu, Sonja J. Prohaska, Peter F. Stadler: Discovering cis-regulatory modules by optimizing barbecues. Discrete Applied Mathematics 157(10): 2458-2468 (2009)

Peter F. Stadler, Sonja J. Prohaska, Christian V. Forst, David C. Krakauer: Defining genes: a computational framework. Theory in Biosciences 128(3): 165-170 (2009)

Andreas Heffel, Sonja J. Prohaska, Peter F. Stadler, Gerhard Kauer, Jens-Peer Kuska: Automatic Classification of Embryonic Fruit Fly Gene Expression Patterns. Bildverarbeitung für die Medizin 2009: 415-419

Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler: Noisy: Identification of problematic columns in multiple sequence alignments. Algorithms for Molecular Biology 3 (2008)

Jörg Lehmann, Peter F. Stadler, Sonja J. Prohaska: SynBlast: Assisting the analysis of conserved synteny information. BMC Bioinformatics 9 (2008)

Sonja J. Prohaska, Peter F. Stadler: "Genes". Theory in Biosciences 127(3): 215-221 (2008)

Andreas Heffel, Peter F. Stadler, Sonja J. Prohaska, Gerhard Kauer, Jens-Peer Kuska: Process flow for classification and clustering of fruit fly gene expression patterns. ICIP 2008: 721-724

Burkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler: Multiple sequence alignment with user-defined anchor points. Algorithms for Molecular Biology 1 (2006)

Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff: Multiple sequence alignment with user-defined constraints at GOBICS. Bioinformatics 21(7): 1271-1273 (2005)

Athanasius F. Bompfünewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L. Hofacker, Jörg Lehmann, Kristin Missal, Axel Mosig, Bettina Müller, Sonja J. Prohaska, Bärbel M. R. Stadler, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, Christina Witwer: Evolutionary patterns of non-coding RNAs. Theory in Biosciences 123(4): 301-369 (2005)

Claudia Fried, Wim Hordijk, Sonja J. Prohaska, Claus R. Stadler, Peter F. Stadler: The Footprint Sorting Problem. Journal of Chemical Information and Modeling 44(2): 332-338 (2004)

Sonja J. Prohaska, Peter F. Stadler: The duplication of the Hox gene clusters in teleost fishes. Theory in Biosciences 123(1): 89-110 (2004)

Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran R. Subramanian, Peter F. Stadler: Multiple sequence alignment with user-defined constraints. German Conference on Bioinformatics 2004: 25-36