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Mark A. Ragan
2010 – today
- 2013
[j20]Sriganesh Srihari, Mark A. Ragan: Systematic tracking of dysregulated modules identifies novel genes in cancer. Bioinformatics 29(12): 1553-1561 (2013)- [j19]Cheong Xin Chan, Maisarah Mahbob, Mark A. Ragan: Clustering evolving proteins into homologous families. BMC Bioinformatics 14: 120 (2013)
- [i1]Sriganesh Srihari, Mark A. Ragan: Computing Pathways to Systems Biology: Key Contributions of Computational Methods in Pathway Identification. CoRR abs/1304.5565 (2013)
- 2012
- [j18]Stefan Maetschke, Martin Simonsen, Melissa J. Davis, Mark A. Ragan: Gene Ontology-driven inference of protein-protein interactions using inducers. Bioinformatics 28(1): 69-75 (2012)
- [j17]Martin Simonsen, Stefan Maetschke, Mark A. Ragan: Automatic selection of reference taxa for protein-protein interaction prediction with phylogenetic profiling. Bioinformatics 28(6): 851-857 (2012)
- [j16]Chenwei Wang, Alperen Taciroglu, Stefan Maetschke, Colleen C. Nelson, Mark A. Ragan, Melissa J. Davis: mCOPA: analysis of heterogeneous features in cancer expression data. J. Clinical Bioinformatics 2: 22 (2012)
- 2011
- [j15]Hans L. Bodlaender, Michael R. Fellows, Michael A. Langston, Mark A. Ragan, Frances A. Rosamond, Mark Weyer: Quadratic Kernelization for Convex Recoloring of Trees. Algorithmica 61(2): 362-388 (2011)
- [j14]Chikako Ragan, Michael Zuker, Mark A. Ragan: Quantitative Prediction of miRNA-mRNA Interaction Based on Equilibrium Concentrations. PLoS Computational Biology 7(2) (2011)
- 2010
- [j13]Stefan Maetschke, Karin S. Kassahn, Jasmyn A. Dunn, Siew-Ping Han, Eva Z. Curley, Katryn J. Stacey, Mark A. Ragan: A visual framework for sequence analysis using n-grams and spectral rearrangement. Bioinformatics 26(6): 737-744 (2010)
- [j12]Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark A. Ragan: Automatic, context-specific generation of Gene Ontology slims. BMC Bioinformatics 11: 498 (2010)
2000 – 2009
- 2009
- [j11]Andrés Esteban-Marcos, Aaron E. Darling, Mark A. Ragan: Seevolution: visualizing chromosome evolution. Bioinformatics 25(7): 960-961 (2009)
- [j10]Tim McComb, Oliver Cairncross, Andrew B. Noske, David L. A. Wood, Brad J. Marsh, Mark A. Ragan: IllouraTM: a software tool for analysis, visualization and semantic querying of cellular and other spatial biological data. Bioinformatics 25(9): 1208-1210 (2009)
- [j9]Todd J. Treangen, Aaron E. Darling, Guillaume Achaz, Mark A. Ragan, Xavier Messeguer, Eduardo P. C. Rocha: A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats. IEEE/ACM Trans. Comput. Biology Bioinform. 6(2): 180-189 (2009)
- 2008
- [j8]Mark A. Ragan, Tim Littlejohn, Bruce Ross: Genome-Scale Computational Biology and Bioinformatics in Australia. PLoS Computational Biology 4(8) (2008)
- [c8]Melissa J. Davis, Andrew Newman, Imran Khan, Jane Hunter, Mark A. Ragan: Integrating Hierarchical Controlled Vocabularies With OWL Ontology: A Case Study from the Domain of Molecular Interactions. APBC 2008: 145-154
- [c7]Todd J. Treangen, Aaron E. Darling, Mark A. Ragan, Xavier Messeguer: Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats. ISBRA 2008: 74-86
- [c6]
- [c5]Mark A. Ragan, Brad J. Marsh: The Visible Cell Project: Changing the Way We Think about Cells. ISPAN 2008: 10
- 2007
- [j7]Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan: A two-phase strategy for detecting recombination in nucleotide sequences. South African Computer Journal 38: 20-27 (2007)
- [c4]Benny Chor, Michael R. Fellows, Mark A. Ragan, Igor Razgon, Frances A. Rosamond, Sagi Snir: Connected Coloring Completion for General Graphs: Algorithms and Complexity. COCOON 2007: 75-85
- [c3]Hans L. Bodlaender, Michael R. Fellows, Michael A. Langston, Mark A. Ragan, Frances A. Rosamond, Mark Weyer: Quadratic Kernelization for Convex Recoloring of Trees. COCOON 2007: 86-96
- 2006
- [j6]Kevin Burrage, Lindsay Hood, Mark A. Ragan: Advanced computing for systems biology. Briefings in Bioinformatics 7(4): 390-398 (2006)
- [j5]Alexander García Castro, Philippe Rocca-Serra, Robert Stevens, Chris F. Taylor, Karim Nashar, Mark A. Ragan, Susanna-Assunta Sansone: The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case. BMC Bioinformatics 7: 267 (2006)
- [j4]Cheong Xin Chan, Robert G. Beiko, Mark A. Ragan: Detecting recombination in evolving nucleotide sequences. BMC Bioinformatics 7: 412 (2006)
- [c2]Hans L. Bodlaender, Michael R. Fellows, Michael A. Langston, Mark A. Ragan, Frances A. Rosamond, Mark Weyer: Kernelization for Convex Recoloring. ACiD 2006: 23-35
- [c1]
- 2005
- [j3]Robert G. Beiko, Cheong Xin Chan, Mark A. Ragan: A word-oriented approach to alignment validation. Bioinformatics 21(10): 2230-2239 (2005)
- [j2]Alexander García Castro, Samuel Thoraval, Leyla Jael García-Castro, Mark A. Ragan: Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator. BMC Bioinformatics 6: 87 (2005)
- 2004
- [j1]Timothy J. Harlow, J. Peter Gogarten, Mark A. Ragan: A hybrid clustering approach to recognition of protein families in 114 microbial genomes. BMC Bioinformatics 5: 45 (2004)
Coauthor Index
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last updated on 2013-06-11 21:50 CEST by the dblp team