Shoba Ranganathan

Christian Schönbach, Sissades Tongsima, Jonathan Chan, Vladimir Brusic, Tin Wee Tan, Shoba Ranganathan: InCoB2012 Conference: from biological data to knowledge to technological breakthroughs. BMC Bioinformatics 13(S-17): S1 (2012)

Ranjeeta Menon, Gagan Garg, Robin B. Gasser, Shoba Ranganathan: TranSeqAnnotator: large-scale analysis of transcriptomic data. BMC Bioinformatics 13(S-17): S24 (2012)

Javed Mohammed Khan, Harish Reddy Cheruku, Joo Chuan Tong, Shoba Ranganathan: MPID-T2: a database for sequence-structure-function analyses of pMHC and TR/pMHC structures. Bioinformatics 27(8): 1192-1193 (2011)

Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan, Tin Wee Tan: Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference. BMC Bioinformatics 12(S-13): S1 (2011)

Varun Khanna, Shoba Ranganathan: In silico approach to screen compounds active against parasitic nematodes of major socio-economic importance. BMC Bioinformatics 12(S-13): S25 (2011)

Varun Khanna, Shoba Ranganathan: Structural diversity of biologically interesting datasets: a scaffold analysis approach. J. Cheminformatics 3: 30 (2011)

Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki: Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research 39(Database-Issue): 7-10 (2011)

Christian Schönbach, Kenta Nakai, Tin Wee Tan, Shoba Ranganathan: InCoB2010 - 9^th International Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010. BMC Bioinformatics 11(S-7): S1 (2010)

Gaurav Kumar, Shoba Ranganathan: Network analysis of human protein location. BMC Bioinformatics 11(S-7): S9 (2010)

Shoba Ranganathan: Towards a career in bioinformatics. BMC Bioinformatics 10(S-15): 1 (2009)

Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan: A comprehensive assessment of N-terminal signal peptides prediction methods. BMC Bioinformatics 10(S-15): 2 (2009)

Varun Khanna, Shoba Ranganathan: Physicochemical property space distribution among human metabolites, drugs and toxins. BMC Bioinformatics 10(S-15): 10 (2009)

Vladimir Brusic, Shoba Ranganathan: Critical technologies for bioinformatics. Briefings in Bioinformatics 9(4): 261-262 (2008)

Khar Heng Choo, Joo Chuan Tong, Shoba Ranganathan: Modeling Escherichia coli signal peptidase complex with bound substrate: determinants in the mature peptide influencing signal peptide cleavage. BMC Bioinformatics 9(S-1) (2008)

Lesheng Kong, Shoba Ranganathan: Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors. BMC Bioinformatics 9(S-1) (2008)

Shivashankar H. Nagaraj, Robin B. Gasser, Alasdair J. Nisbet, Shoba Ranganathan: In silico analysis of expressed sequence tags from Trichostrongylus vitrinus (Nematoda): comparison of the automated ESTExplorer workflow platform with conventional database searches. BMC Bioinformatics 9(S-1) (2008)

Shoba Ranganathan, Michael Gribskov, Tin Wee Tan: Bioinformatics research in the Asia Pacific: a 2007 update. BMC Bioinformatics 9(S-1) (2008)

Khar Heng Choo, Shoba Ranganathan: Flanking signal and mature peptide residues influence signal peptide cleavage. BMC Bioinformatics 9(S-12) (2008)

Jitendra Gaikwad, Varun Khanna, Subramanyam Vemulpad, Joanne Jamie, Jim Kohen, Shoba Ranganathan: CMKb: a web-based prototype for integrating Australian Aboriginal customary medicinal plant knowledge. BMC Bioinformatics 9(S-12) (2008)

Shoba Ranganathan, Wen-Lian Hsu, Ueng-Cheng Yang, Tin Wee Tan: Emerging strengths in Asia Pacific bioinformatics. BMC Bioinformatics 9(S-12) (2008)

Shivashankar H. Nagaraj, Robin B. Gasser, Shoba Ranganathan: A hitchhiker's guide to expressed sequence tag (EST) analysis. Briefings in Bioinformatics 8(1): 6-21 (2007)

Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan: Methods and protocols for prediction of immunogenic epitopes. Briefings in Bioinformatics 8(2): 96-108 (2007)

Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan: In silico grouping of peptide/HLA class I complexes using structural interaction characteristics. Bioinformatics 23(2): 177-183 (2007)

Lawrence J. K. Wee, Tin Wee Tan, Shoba Ranganathan: CASVM: web server for SVM-based prediction of caspase substrates cleavage sites. Bioinformatics 23(23): 3241-3243 (2007)

Kanagasabai Rajaraman, Khar Heng Choo, Shoba Ranganathan, Christopher J. O. Baker: A Workflow for Mutation Extraction and Structure Annotation. J. Bioinformatics and Computational Biology 5(6): 1319-1337 (2007)

Shivashankar H. Nagaraj, Nandan Deshpande, Robin B. Gasser, Shoba Ranganathan: ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform. Nucleic Acids Research 35(Web-Server-Issue): 143-147 (2007)

Joo Chuan Tong, Guanglan Zhang, Tin Wee Tan, J. Thomas August, Vladimir Brusic, Shoba Ranganathan: Prediction of HLA-DQ3.2ß Ligands: evidence of multiple registers in class II binding peptides. Bioinformatics 22(10): 1232-1238 (2006)

Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan: Establishing bioinformatics research in the Asia Pacific. BMC Bioinformatics 7(S-5) (2006)

Joo Chuan Tong, Tin Wee Tan, Animesh A. Sinha, Shoba Ranganathan: Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6- associated Pemphigus vulgaris. BMC Bioinformatics 7(S-5) (2006)

Lawrence J. K. Wee, Tin Wee Tan, Shoba Ranganathan: SVM-based prediction of caspase substrate cleavage sites. BMC Bioinformatics 7(S-5) (2006)

Johann Lenffer, Frank W. Nicholas, Kao Castle, Arjun Rao, Stefan Gregory, Michael Poidinger, Matthew D. Mailman, Shoba Ranganathan: OMIA (Online Mendelian Inheritance in Animals): an enhanced platform and integration into the Entrez search interface at NCBI. Nucleic Acids Research 34(Database-Issue): 599-601 (2006)

Durgaprasad Bollina, Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan: ASGS: an alternative splicing graph web service. Nucleic Acids Research 34(Web-Server-Issue): 444-447 (2006)

Khar Heng Choo, Tin Wee Tan, Shoba Ranganathan: SPdb - a signal peptide database. BMC Bioinformatics 6: 249 (2005)

Shoba Ranganathan: Bioinformatics Education - Perspectives and Challenges. PLoS Computational Biology 1(6) (2005)

Durgaprasad Bollina, Bernett T. K. Lee, Shoba Ranganathan: MVC Architecture in Bioinformatics web applications and its Java implementation. iiWAS 2005: 759-764

Lesheng Kong, Shoba Ranganathan: Delineation of modular proteins: Domain boundary prediction from sequence information. Briefings in Bioinformatics 5(2): 179-192 (2004)

Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan: DEDB: a database of Drosophila melanogaster exons in splicing graph form. BMC Bioinformatics 5: 189 (2004)

Vivek Gopalan, Tin Wee Tan, Bernett T. K. Lee, Shoba Ranganathan: Xpro: database of eukaryotic protein-encoding genes. Nucleic Acids Research 32(Database-Issue): 59-63 (2004)

Lesheng Kong, Bernett Teck Kwong Lee, Joo Chuan Tong, Tin Wee Tan, Shoba Ranganathan: SDPMOD: an automated comparative modeling server for small disulfide-bonded proteins. Nucleic Acids Research 32(Web-Server-Issue): 356-359 (2004)

Vivek Gopalan, Tin Wee Tan, Shoba Ranganathan: XdomView: protein domain and exon position visualization. Bioinformatics 19(1): 159-160 (2003)

Kunde Ramamoorthy Govindarajan, Pandjassarame Kangueane, Tin Wee Tan, Shoba Ranganathan: MPID: MHC-Peptide Interaction Database for sequence-structure-function information on peptides binding to MHC molecules. Bioinformatics 19(2): 309-310 (2003)

Bernett T. K. Lee, Tin Wee Tan, Shoba Ranganathan: MGAlignIt: a web service for the alignment of mRNA/EST and genomic sequences. Nucleic Acids Research 31(13): 3533-3536 (2003)

Russ B. Altman, Alfonso Valencia, Satoru Miyano, Shoba Ranganathan: Challenges for Intelligent Systems in Biology. IEEE Intelligent Systems 16(6): 14-20 (2001)