Habtom W. Ressom

Jinlian Wang, Yuji Zhang, Catalin Marian, Habtom W. Ressom: Identification of aberrant pathways and network activities from high-throughput data. Briefings in Bioinformatics 13(4): 406-419 (2012)

Mohammad R. Nezami Ranjbar, Yi Zhao, Mahlet G. Tadesse, Yue Wang, Habtom W. Ressom: Evaluation of normalization methods for analysis of LC-MS data. BIBM Workshops 2012: 610-617

Jinlian Wang, Hongyan Yuan, Mahlet G. Tadesse, Habtom W. Ressom: Integration of multiple data sources for identifying functional modules using Bayesian network. GENSiPS 2012: 13-17

Mohammad R. Nezami Ranjbar, Mahlet G. Tadesse, Yue Wang, Habtom W. Ressom: Normalization of LC-MS data using Gaussian process. GENSiPS 2012: 187-190

Yi Zhao, Tsung-Heng Tsai, Cristina Di Poto, Lewis K. Pannell, Mahlet G. Tadesse, Habtom W. Ressom: Variability assessment of LC-MS experiments and its application to experimental design and difference detection. GENSiPS 2012: 195-198

Getachew K. Befekadu, Mahlet G. Tadesse, Tsung-Heng Tsai, Habtom W. Ressom: Probabilistic Mixture Regression Models for Alignment of LC-MS Data. IEEE/ACM Trans. Comput. Biology Bioinform. 8(5): 1417-1424 (2011)

Rency S. Varghese, Bin Zhou, Habtom W. Ressom: Meta-analysis of LC-MS based metabolomic experiments. BIBM Workshops 2011: 157-164

Bin Zhou, Jun Feng Xiao, Habtom W. Ressom: A Computational Pipeline for LC-MS/MS Based Metabolite Identification. BIBM 2011: 247-251

Tsung-Heng Tsai, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom: Bayesian Alignment Model for LC-MS Data. BIBM 2011: 261-264

Mohammad R. Nezami Ranjbar, Yue Joseph Wang, Habtom W. Ressom: Quality assessment of LC-MS metabolomic data. BIBM Workshops 2011: 1034-1036

Jinlian Wang, Habtom W. Ressom: Analysis of aberrant pathways using HCC candidate biomarkers identified from high-throuput omics studies. BIBM Workshops 2011: 1037-1038

Michael Ochs, Rachel Karchin, Habtom W. Ressom, Robert Gentleman: Workshop Introduction. Pacific Symposium on Biocomputing 2011: 364-368

Zhiqun Tang, Lihua Zhang, Amrita K. Cheema, Habtom W. Ressom: A new method for alignment of LC-MALDI-TOF data. BIBM 2010: 346-351

Yuji Zhang, Jianhua Jason Xuan, Robert Clarke, Habtom W. Ressom: Module-based biomarker discovery in breast cancer. BIBM 2010: 352-356

Prabhjit Kaur, Kathryn Sheikh, Alexander Kirilyuk, Ksenia Kirilyuk, Habtom W. Ressom, Amrita K. Cheema, Bhaskar Kallakury: Metabolomic profiling for biomarker discovery in pancreatic cancer. BIBM 2010: 505-509

Habtom W. Ressom, Getachew K. Befekadu, Mahlet G. Tadesse: Analysis of LC-MS Data Using probabilitic-based mixture regression models (Analyse von LC-MS-Daten mit wahrscheinlichkeitsbasierter Mischung von Regressionsmodellen). Automatisierungstechnik 57(9): 453-465 (2009)

Michael Ochs, John Quackenbush, Ramana Davuluri, Habtom W. Ressom: Session Introduction. Pacific Symposium on Biocomputing 2009: 353-355

Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom: Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data. BMC Bioinformatics 9 (2008)

Getachew K. Befekadu, Mahlet G. Tadesse, Habtom W. Ressom: Probabilistic-Based Mixture Regression Models for Multi-Class Alignment of LC-MS Data. BIOCOMP 2008: 368-373

Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Robert Clarke, Habtom W. Ressom: Reverse Engineering Module Networks by PSO-RNN Hybrid Modeling. BIOCOMP 2008: 401-407

Habtom W. Ressom, Rency S. Varghese, Lenka Goldman, Christopher A. Loffredo, Mohamed Abdel-Hamid, Zuzana Kyselova, Yehia Mechref, Milos V. Novotny, Radoslav Goldman: Analysis of MALDI-TOF Spectrometry Data for Detection of Glycan Biomarkers. Pacific Symposium on Biocomputing 2008: 216-227

Habtom W. Ressom, Rency S. Varghese, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman: Peak selection from MALDI-TOF mass spectra using ant colony optimization. Bioinformatics 23(5): 619-626 (2007)

Mohamad T. Musavi, Habtom W. Ressom, S. Srirangam, Padma Natarajan, R. W. Virnstein, L. J. Morris, W. Tweedale: Neural network-based light attenuation model for monitoring seagrass population in the Indian river lagoon. J. Intell. Inf. Syst. 29(1): 63-77 (2007)

Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman: Biomarker Identification and Rule Extraction from Mass Spectral Serum Profiles. CIBCB 2006: 1-7

Habtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Joseph Wang, Robert Clarke: Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm Intelligence. CIBCB 2006: 1-8

Habtom W. Ressom, Kevin Turner, Mohamad T. Musavi: Estimation of Ocean Water Chlorophyll-a Concentration Using Fuzzy C-means Clustering and Artificial Neural Networks. IJCNN 2006: 4118-4125

Habtom W. Ressom, Rency S. Varghese, Mohamed Abdel-Hamid, Sohair Abdel-Latif Eissa, Daniel Saha, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Christopher A. Loffredo, Radoslav Goldman: Analysis of mass spectral serum profiles for biomarker selection. Bioinformatics 21(21): 4039-4045 (2005)

Habtom W. Ressom, Padma Natarajan, Rency S. Varghese, Mohamad T. Musavi: Applications of fuzzy logic in genomics. Fuzzy Sets and Systems 152(1): 125-138 (2005)

Habtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman: Analysis of MALDI-TOF Serum Profiles for Biomarker Selection and Sample Classification. CIBCB 2005: 378-384

Habtom W. Ressom, Rency S. Varghese, Daniel Saha, Eduard Orvisky, Lenka Goldman, Emanuel F. Petricoin, Thomas P. Conrads, Timothy D. Veenstra, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman: Particle swarm optimization for analysis of mass spectral serum profiles. GECCO 2005: 431-438

Wayne H. Slade Jr., Habtom W. Ressom, Mohamad T. Musavi, Richard L. Miller: Inversion of ocean color observations using particle swarm optimization. IEEE T. Geoscience and Remote Sensing 42(9): 1915-1923 (2004)

Wayne H. Slade Jr., Richard L. Miller, Habtom W. Ressom, Padma Natarajan: Neural network-based retrieval of phytoplankton abundance from remotely-sensed ocean radiance. Neural Networks and Computational Intelligence 2004: 226-231

Habtom W. Ressom, S. K. Fyfe, S. Srirangam, Mohamad T. Musavi, Padma Natarajan: Estimation of photosynthetic efficiency for monitoring seagrass health using neural networks. Neural Networks and Computational Intelligence 2004: 232-237

Habtom W. Ressom, Dali Wang, Padma Natarajan: Adaptive double self-organizing maps for clustering gene expression profiles. Neural Networks 16(5-6): 633-640 (2003)

Habtom W. Ressom, Dali Wang, Padma Natarajan: Computational Methods for Identifying Number of Clusters in Gene Expression Data. Neural Networks and Computational Intelligence 2003: 233-238

N. Xiong, Lothar Litz, Habtom W. Ressom: Learning Premises of Fuzzy Rules for Knowledge Acquisition in Classification Problems. Knowl. Inf. Syst. 4(1): 96-111 (2002)

Mohamad T. Musavi, Habtom W. Ressom, Ross Hinkle, Richard L. Miller: Biodiversity and Ecosystems Informatics Workshop for the Indian River Lagoon. DG.O 2002

Dali Wang, Habtom W. Ressom, Mohamad T. Musavi, Christian Domnisoru: Double self-organizing maps to cluster gene expression data. ESANN 2002: 45-50

Robert Reynolds, Habtom W. Ressom, Mohamad T. Musavi, Christian Domnisoru: Improving robustness of fuzzy gene modeling. ESANN 2002: 51-56

Habtom W. Ressom: Modeling a Refrigeration System Using Recurrent Neural Networks. Fuzzy Days 1999: 47-52

Habtom W. Ressom, Lothar Litz: Neurocontrol of Nonlinear Dynamic Systems Subject to Unmeasured Disturbance Inputs. ICANN 1997: 855-860