Andre Sanches Ribeiro
List of publications from the DBLP Bibliography Server - FAQ
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 | 2012 | |
|---|---|---|
| j18 |      | Eero Lihavainen, Jarno Mäkelä, Johannes N. Spelbrink, Andre S. Ribeiro: Mytoe: automatic analysis of mitochondrial dynamics. Bioinformatics 28(7): 1050-1051 (2012) |
| j17 | | Jason Lloyd-Price, Abhishekh Gupta, Andre S. Ribeiro: SGNS2: a compartmentalized stochastic chemical kinetics simulator for dynamic cell populations. Bioinformatics 28(22): 3004-3005 (2012) |
| j16 | | Meenakshisundaram Kandhavelu, Eero Lihavainen, Anantha Barathi Muthukrishnan, Olli Yli-Harja, Andre Sanches Ribeiro: Effects of Mg2+ on in vivo transcriptional dynamics of the lar promoter. Biosystems 107(3): 129-134 (2012) |
| j15 | | Frank Emmert-Streib, Antti Häkkinen, Andre S. Ribeiro: Detecting sequence dependent transcriptional pauses from RNA and protein number time series. BMC Bioinformatics 13: 152 (2012) |
| j14 | | Antti Häkkinen, Andre S. Ribeiro: Evolving kinetics of gene expression in stochastic environments. Computational Biology and Chemistry 37: 11-16 (2012) |
| j13 | | Andre S. Ribeiro, Antti Häkkinen, Jason Lloyd-Price: Effects of gene length on the dynamics of gene expression. Computational Biology and Chemistry 41: 1-9 (2012) |
| c3 | | Paolo Ballarini, Jarno Mäkelä, Andre S. Ribeiro: Expressive Statistical Model Checking of Genetic Networks with Delayed Stochastic Dynamics. CMSB 2012: 29-48 |
| c2 | | Ilya Potapov, Jarno Mäkelä, Olli Yli-Harja, Andre S. Ribeiro: Sequence Dependent Properties of the Expression Dynamics of Genes and Gene Networks. CMSB 2012: 307-321 |
| 2011 | ||
| j12 | | Jarno Mäkelä, Heikki Huttunen, Meenakshisundaram Kandhavelu, Olli Yli-Harja, Andre S. Ribeiro: Automatic detection of changes in the dynamics of delayed stochastic gene networks and in vivo production of RNA molecules in Escherichia coli. Bioinformatics 27(19): 2714-2720 (2011) |
| j11 | | Andre S. Ribeiro, Jason Lloyd-Price, Sharif Chowdhury, Olli Yli-Harja: Diversity of temporal correlations between genes in models of noisy and noiseless gene networks. Biosystems 104(2-3): 136-144 (2011) |
| j10 | | Jarno Mäkelä, Jason Lloyd-Price, Olli Yli-Harja, Andre S. Ribeiro: Stochastic sequence-level model of coupled transcription and translation in prokaryotes. BMC Bioinformatics 12: 121 (2011) |
| j9 | | Henrik Mannerstrom, Olli Yli-Harja, Andre S. Ribeiro: Inference of Kinetic Parameters of Delayed Stochastic Models of Gene Expression Using a Markov Chain Approximation. EURASIP J. Bioinformatics and Systems Biology 2011 (2011) |
| j8 | | Antti Häkkinen, Fred G. Biddle, Olli-Pekka Smolander, Olli Yli-Harja, Andre S. Ribeiro: Evolutionary Dynamics of a Population of Cells with a Toxin Suppressor Gene. T. Comp. Sys. Biology 13: 1-12 (2011) |
| 2010 | ||
| j7 | | Andre S. Ribeiro, Jason Lloyd-Price, Brenda A. Eales, Fred G. Biddle: Dynamic Agent-Based Model of Hand-Preference Behavior Patterns in the Mouse. Adaptive Behaviour 18(2): 116-131 (2010) |
| j6 | | Andre S. Ribeiro, Antti Häkkinen, Shannon Healy, Olli Yli-Harja: Dynamical effects of transcriptional pause-prone sites. Computational Biology and Chemistry 34(3): 143-148 (2010) |
| j5 | | Tiina Rajala, Antti Häkkinen, Shannon Healy, Olli Yli-Harja, Andre S. Ribeiro: Effects of Transcriptional Pausing on Gene Expression Dynamics. PLoS Computational Biology 6(3) (2010) |
| 2009 | ||
| j4 | | Xiaofeng Dai, Olli Yli-Harja, Andre S. Ribeiro: Determining noisy attractors of delayed stochastic gene regulatory networks from multiple data sources. Bioinformatics 25(18): 2362-2368 (2009) |
| j3 | | Andre S. Ribeiro, Olli-Pekka Smolander, Tiina Rajala, Antti Häkkinen, Olli Yli-Harja: Delayed Stochastic Model of Transcription at the Single Nucleotide Level. Journal of Computational Biology 16(4): 539-553 (2009) |
| 2008 | ||
| c1 |  | Frank Emmert-Streib, Andre S. Ribeiro: Optimize Observational Time Points to Maximize the Inferability of Gene Networks. BIOCOMP 2008: 55-60 |
| 2007 | ||
| j2 | | Andre S. Ribeiro, Jason Lloyd-Price: SGN Sim, a Stochastic Genetic Networks Simulator. Bioinformatics 23(6): 777-779 (2007) |
| j1 | | Andre S. Ribeiro, Daniel A. Charlebois, Jason Lloyd-Price: CellLine, a stochastic cell lineage simulator. Bioinformatics 23(24): 3409-3411 (2007) |
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