Isidore Rigoutsos

Phillipe Loher, Isidore Rigoutsos: Interactive exploration of RNA22 microRNA target predictions. Bioinformatics 28(24): 3322-3323 (2012)

Tien Huynh, Michail Vlachos, Isidore Rigoutsos: Anchoring millions of distinct reads on the human genome within seconds. EDBT 2010: 252-262

Aristotelis Tsirigos, Isidore Rigoutsos: Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes. PLoS Computational Biology 5(12) (2009)

Kyle L. Jensen, Mark P. Styczynski, Isidore Rigoutsos, Gregory Stephanopoulos: A generic motif discovery algorithm for sequential data. Bioinformatics 22(1): 21-28 (2006)

Irene M. Mullins, Mir S. Siadaty, Jason A. Lyman, Ken Scully, Carleton T. Garrett, W. Greg Miller, Rudy Muller, Barry Robson, Chid Apté, Sholom M. Weiss, Isidore Rigoutsos, Daniel E. Platt, Simona Cohen, William A. Knaus: Data mining and clinical data repositories: Insights from a 667, 000 patient data set. Comp. in Bio. and Med. 36(12): 1351-1377 (2006)

Tien Huynh, Isidore Rigoutsos: The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update. Nucleic Acids Research 32(Web-Server-Issue): 10-15 (2004)

Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos: Report on BIOKDD04: workshop on data mining in Bioinformatics. SIGKDD Explorations 6(2): 153-154 (2004)

Isidore Rigoutsos, Tien Huynh: Chung-Kwei: a Pattern-discovery-based System for the Automatic Identification of Unsolicited E-mail Messages (SPAM). CEAS 2004

Isidore Rigoutsos: Of parts and relationships: an unending quest. CIKM 2004: 250

Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos (Eds.): Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2004), August 22th, 2004, Seattle, Washington, USA. 2004

Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vassilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis: Evaluation of annotation strategies using an entire genome sequence. Bioinformatics 19(6): 717-726 (2003)

Tien Huynh, Isidore Rigoutsos, Laxmi Parida, Daniel E. Platt, Tetsuo Shibuya: The web server of IBM's Bioinformatics and Pattern Discovery group. Nucleic Acids Research 31(13): 3645-3650 (2003)

Xiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Isidore Rigoutsos, Kaizhong Zhang: Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining. IEEE Trans. Knowl. Data Eng. 14(4): 731-749 (2002)

Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Yuan Gao: DELPHI: A pattern-based method for detecting sequence similarity. IBM Journal of Research and Development 45(3): 455-474 (2001)

Daniel E. Platt, Laxmi Parida, Yuan Gao, Aris Floratos, Isidore Rigoutsos: QSAR in grossly underdetermined systems: Opportunities and issues. IBM Journal of Research and Development 45(3): 533-544 (2001)

Laxmi Parida, Isidore Rigoutsos, Daniel E. Platt: An Output-Sensitive Flexible Pattern Discovery Algorithm. CPM 2001: 131-142

Laxmi Parida, Isidore Rigoutsos, Aris Floratos, Daniel E. Platt, Yuan Gao: Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm. SODA 2000: 297-308

Laxmi Parida, Aris Floratos, Isidore Rigoutsos: An Approximation Algorithm for Alignment of Multiple Sequences using Motif Discovery. J. Comb. Optim. 3(2-3): 247-275 (1999)

Isidore Rigoutsos, Daniel E. Platt, Andrea Califano, B. David Silverman: Representation and Matching of Small Flexible Molecules in Large Databases of 3D Molecular Information. Pattern Discovery in Biomolecular Data 1999: 111-129

Isidore Rigoutsos, Yuan Gao, Aris Floratos, Laxmi Parida: Building Dictionaries of 1D and 3D Motifs by Mining the Unaligned 1D Sequences of 17 Archaeal and Bacterial Genomes. ISMB 1999: 223-233

Aris Floratos, Isidore Rigoutsos, Laxmi Parida, Gustovo Stolovitzky, Yuan Gao: Sequence homology detection through large scale pattern discovery. RECOMB 1999: 164-169

Isidore Rigoutsos, Aris Floratos: Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm [published erratum appears in Bioinformatics 1998;14(2): 229]. Bioinformatics 14(1): 55-67 (1998)

Isidore Rigoutsos, Alex Delis: Managing Statistical Behavior of Large Data Sets in Shared-Nothing Architectures. IEEE Trans. Parallel Distrib. Syst. 9(11): 1073-1087 (1998)

Isidore Rigoutsos: Well-Behaved, Tunable 3D-Affine Invariants. CVPR 1998: 455-460

Isidore Rigoutsos: Two-Dimensional Affine Invariants that Distribute Uniformly and can be Tuned to any Convex Feature Domain. ICCV 1998: 622-627

Isidore Rigoutsos, Aris Floratos: Motif discovery without alignment or enumeration (extended abstract). RECOMB 1998: 221-227

Xiong Wang, Jason Tsong-Li Wang, Dennis Shasha, Bruce A. Shapiro, Sitaram Dikshitulu, Isidore Rigoutsos, Kaizhong Zhang: Automated Discovery of Active Motifs in Three Dimensional Molecules. KDD 1997: 89-95

Isidore Rigoutsos, Alex Delis: The Impact of Hashing Function Choice on the Load Balancing in Very Large Dartasets. SEKE 1996: 301-308

Isidore Rigoutsos, Robert A. Hummel: A Bayesian Approach to Model Matching with Geometric Hashing. Computer Vision and Image Understanding 62(1): 11-26 (1995)

Andrea Califano, Isidore Rigoutsos: FLASH: A Fast Look-Up Algorithm for String Homology. ISMB 1993: 56-64

Isidore Rigoutsos, Robert A. Hummel: Massively Parallel Model Matching: Geometric Hashing on the Connection Machine. IEEE Computer 25(2): 33-42 (1992)

Marsha Berger, Isidore Rigoutsos: An algorithm for point clustering and grid generation. IEEE Transactions on Systems, Man, and Cybernetics 21(5): 1278-1286 (1991)

Yiannis Aloimonos, Isidore Rigoutsos: Determining the 3-D Motion of a Rigid Surface Patch Without Correspondence under Perspective Projection. AAAI 1986: 681-688