Miguel Rocha

Miguel P. Rocha, Miguel Francisco de Almeida Pereira da Rocha

	2013
j19		Jorge Henrique Martins de Pinho, João Luis Ferreira Sobral, Miguel Rocha: Parallel evolutionary computation in bioinformatics applications. Computer Methods and Programs in Biomedicine 110(2): 183-191 (2013)
	2012
j18		Paulo Cortez, Miguel Rio, Miguel Rocha, Pedro Sousa: Multi-scale Internet traffic forecasting using neural networks and time series methods. Expert Systems 29(2): 143-155 (2012)
j17		Paulo Maia, Paulo Vilaça, Isabel Rocha, Marcellinus Pont, Jean-François Tomb, Miguel Rocha: An integrated computational environment for elementary modes analysis of biochemical networks. IJDMB 6(4): 382-395 (2012)
j16		Emanuel Gonçalves, Rui Pereira, Isabel Rocha, Miguel Rocha: Optimization Approaches for the In Silico Discovery of Optimal Targets for Gene Over/Underexpression. Journal of Computational Biology 19(2): 102-114 (2012)
j15		Sara Correia, Miguel Rocha: In silico strain optimization by adding reactions to metabolic models. J. Integrative Bioinformatics 9(3) (2012)
c54		André Zúquete, Pedro Correia, Miguel Rocha: A Framework for Enforcing User-Based Authorization Policies on Packet Filter Firewalls. Communications and Multimedia Security 2012: 204-206
c53		André Zúquete, Miguel Rocha: Identification of source applications for enhanced traffic analysis and anomaly detection. ICC 2012: 6694-6698
c52		Paulo Cortez, Rui Vaz, Miguel Rocha, Miguel Rio, Pedro Sousa: Evolutionary Symbiotic Feature Selection for Email Spam Detection. ICINCO (1) 2012: 159-164
c51		Sara Correia, Miguel Rocha: Computational Tools for Strain Optimization by Adding Reactions. PACBB 2012: 241-250
c50		Emanuel Gonçalves, Isabel Rocha, Miguel Rocha: Computational Tools for Strain Optimization by Tuning the Optimal Level of Gene Expression. PACBB 2012: 251-258
c49		João Cardoso, Paulo Vilaça, Simão Soares, Miguel Rocha: An Algorithm to Assemble Gene-Protein-Reaction Associations for Genome-Scale Metabolic Model Reconstruction. PRIB 2012: 118-128
c48		Marcelo Maraschin, Amélia Somensi-Zeggio, Simone K. Oliveira, Shirley Kuhnen, Maíra M. Tomazzoli, Ana C. M. Zeri, Rafael Carreira, Miguel Rocha: A Machine Learning and Chemometrics Assisted Interpretation of Spectroscopic Data - A NMR-Based Metabolomics Platform for the Assessment of Brazilian Propolis. PRIB 2012: 129-140
e5		Miguel P. Rocha, Nicholas M. Luscombe, Florentino Fdez-Riverola, Juan M. Corchado Rodríguez (Eds.): 6th International Conference on Practical Applications of Computational Biology & Bioinformatics. Advances in Intelligent and Soft Computing 154, Springer 2012, isbn 978-3-642-28838-8
	2011
j14		Miguel Rocha, Pedro Nuno Miranda de Sousa, Paulo Cortez, Miguel Rio: Quality of Service constrained routing optimization using Evolutionary Computation. Appl. Soft Comput. 11(1): 356-364 (2011)
j13		Anália Lourenço, Sónia Carneiro, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha: Challenges in integrating Escherichia coli molecular biology data. Briefings in Bioinformatics 12(2): 91-103 (2011)
j12		Paulo Vilaça, Isabel Rocha, Miguel Rocha: A computational tool for the simulation and optimization of microbial strains accounting integrated metabolic/regulatory information. Biosystems 103(3): 435-441 (2011)
j11		Rafael Carreira, Sónia Carneiro, Rui Pereira, Miguel Rocha, Isabel Rocha, Eugénio C. Ferreira, Anália Lourenço: Semantic annotation of biological concepts interplaying microbial cellular responses. BMC Bioinformatics 12: 460 (2011)
j10		Clotilde Lopes, Paulo Cortez, Pedro Nuno Miranda de Sousa, Miguel Rocha, Miguel Rio: Symbiotic filtering for spam email detection. Expert Syst. Appl. 38(8): 9365-9372 (2011)
j9		Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha: A Study of the Short and Long-term Regulation of E. coli Metabolic Pathways. J. Integrative Bioinformatics 8(3) (2011)
c47		Miguel Rocha, Tiago Sá, Pedro Nuno Miranda de Sousa, Paulo Cortez, Miguel Rio: Multiobjective Evolutionary Algorithms for intradomain routing optimization. IEEE Congress on Evolutionary Computation 2011: 2272-2279
c46		Pedro Evangelista, Jorge Henrique Martins de Pinho, Emanuel Gonçalves, Paulo Maia, João Luis Ferreira Sobral, Miguel Francisco de Almeida Pereira da Rocha: A Software Platform for Evolutionary Computation with Pluggable Parallelism and Quality Assurance. EANN/AIAI (2) 2011: 45-50
c45		Anália Lourenço, Sónia Carneiro, José P. Pinto, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha: Interpreting the Regulatory Interplay in E. coli Metabolic Pathways. PACBB 2011: 303-312
c44		Paulo Vilaça, Paulo Maia, Miguel Rocha: A Study on the Robustness of Strain Optimization Algorithms. PACBB 2011: 329-336
c43		José Pedro Pinto, Isabel Rocha, Miguel Rocha: Highlighting Metabolic Strategies Using Network Analysis over Strain Optimization Results. PRIB 2011: 109-120
c42		Pedro Nuno Miranda de Sousa, Paulo Cortez, Miguel Rio, Miguel Rocha: Traffic Engineering Approaches Using Multicriteria Optimization Techniques. WWIC 2011: 104-115
e4		Miguel P. Rocha, Juan M. Corchado Rodríguez, Florentino Fdez-Riverola, Alfonso Valencia (Eds.): 5th International Conference on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, April 6-8, 2011, Salamanca, Spain. Advances in Intelligent and Soft Computing 93, Springer 2011, isbn 978-3-642-19913-4
	2010
j8		Daniel Glez-Peña, Miguel Reboiro-Jato, Paulo Maia, Miguel Rocha, Fernando Díaz, Florentino Fdez-Riverola: AIBench: A rapid application development framework for translational research in biomedicine. Computer Methods and Programs in Biomedicine 98(2): 191-203 (2010)
j7		Anália Lourenço, Rafael Carreira, Daniel Glez-Peña, José Ramon Méndez, Sónia Carneiro, Luis Mateus Rocha, Fernando Díaz, Eugénio C. Ferreira, Isabel Rocha, Florentino Fdez-Riverola, Miguel Rocha: BioDR: Semantic indexing networks for biomedical document retrieval. Expert Syst. Appl. 37(4): 3444-3453 (2010)
c41		Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira: Model Transformation of Metabolic Networks using a Petri Net Based Framework. ACSD/Petri Nets Workshops 2010: 103-117
c40		José P. Pinto, Isabel Rocha, Miguel Rocha: A software tool for network topology analysis under a metabolic engineering perspective. BCB 2010: 569-578
c39		Paulo Vilaça, Paulo Maia, Isabel Rocha, Miguel Rocha: Metaheuristics for Strain Optimization Using Transcriptional Information Enriched Metabolic Models. EvoBIO 2010: 205-216
c38		Paulo Cortez, André Correia, Pedro Nuno Miranda de Sousa, Miguel Rocha, Miguel Rio: Spam Email Filtering Using Network-Level Properties. ICDM 2010: 476-489
c37		José P. Faria, Miguel Rocha, Rick L. Stevens, Christopher S. Henry: Analysis of the Effect of Reversibility Constraints on the Predictions of Genome-Scale Metabolic Models. IWPACBB 2010: 209-215
c36		Paulo Maia, Marcellinus Pont, Jean-François Tomb, Isabel Rocha, Miguel Rocha: Enhancing Elementary Flux Modes Analysis Using Filtering Techniques in an Integrated Environment. IWPACBB 2010: 217-224
c35		Jorge Henrique Martins de Pinho, Miguel Francisco de Almeida Pereira da Rocha, João Luis Ferreira Sobral: Pluggable Parallelization of Evolutionary Algorithms Applied to the Optimization of Biological Processes. PDP 2010: 395-402
e3		Miguel P. Rocha, Florentino Fernández Riverola, Hagit Shatkay, Juan M. Corchado (Eds.): Advances in Bioinformatics - 4th International Workshop on Practical Applications of Computational Biology and Bioinformatics 2010 (IWPACBB 2010), Guimarães, Portugal, 16-18 June 2010. Advances in Soft Computing 74, Springer 2010, isbn 978-3-642-13213-1
	2009
j6		Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha: @Note: A workbench for Biomedical Text Mining. Journal of Biomedical Informatics 42(4): 710-720 (2009)
c34		Pedro Evangelista, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha: Evolutionary Approaches for Strain Optimization Using Dynamic Models under a Metabolic Engineering Perspective. EvoBIO 2009: 140-151
c33		Pedro Evangelista, Paulo Maia, Miguel Rocha: Implementing Metaheuristic Optimization Algorithms with JECoLi. ISDA 2009: 505-510
c32		Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Rafael Carreira, Luis Mateus Rocha, Daniel Glez-Peña, José Ramon Méndez, Florentino Fdez-Riverola, Fernando Díaz, Isabel Rocha, Miguel Rocha: Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing. IWANN (2) 2009: 954-963
c31		Daniel Machado, Rafael S. Costa, Miguel Rocha, Isabel Rocha, Bruce Tidor, Eugénio C. Ferreira: A Critical Review on Modelling Formalisms and Simulation Tools in Computational Biosystems. IWANN (2) 2009: 1063-1070
c30		Pedro Evangelista, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha: A Software Tool for the Simulation and Optimization of Dynamic Metabolic Models. IWANN (2) 2009: 1071-1078
c29		Paulo Cortez, Clotilde Lopes, Pedro Nuno Miranda de Sousa, Miguel Rocha, Miguel Rio: Symbiotic Data Mining for Personalized Spam Filtering. Web Intelligence 2009: 149-156
e2		Sigeru Omatu, Miguel Rocha, José Bravo, Florentino Fernández Riverola, Emilio Corchado, Andrés Bustillo, Juan M. Corchado (Eds.): Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living, 10th International Work-Conference on Artificial Neural Networks, IWANN 2009 Workshops, Salamanca, Spain, June 10-12, 2009. Proceedings, Part II. Lecture Notes in Computer Science 5518, Springer 2009, isbn 978-3-642-02480-1
e1		Juan M. Corchado, Juan Francisco de Paz, Miguel Rocha, Florentino Fernández Riverola (Eds.): 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics, IWPACBB 2008, Salamanca, Spain, 22th-24th October 2008. Advances in Soft Computing 49, Springer 2009, isbn 978-3-540-85860-7
	2008
j5		Miguel Rocha, Paulo Maia, Rui Mendes, José P. Pinto, Eugénio C. Ferreira, Jens Nielsen, Kiran Raosaheb Patil, Isabel Rocha: Natural computation meta-heuristics for the in silico optimization of microbial strains. BMC Bioinformatics 9 (2008)
c28		Anália Lourenço, Rafael Carreira, Sónia Carneiro, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha: A framework for the development of Biomedical Text Mining software tools. BIBE 2008: 1-6
c27		Paulo Maia, Isabel Rocha, Eugénio C. Ferreira, Miguel Rocha: Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains. BIBE 2008: 1-6
c26		Rui Mendes, Anália Lourenço, Sónia Carneiro, Miguel Rocha, Isabel Rocha, Eugénio C. Ferreira: A framework for the integrated analysis of metabolic and regulatory networks. BIBE 2008: 1-6
c25		Miguel Rocha, Pedro Nuno Miranda de Sousa, Paulo Cortez, Miguel Rio: An Evolutionary Algorithm for Unicast/ Multicast Traffic Engineering. ICINCO-ICSO 2008: 238-243
c24		José Ramon Méndez, I. Cid, Daniel Glez-Peña, Miguel Rocha, Florentino Fdez-Riverola: A Comparative Impact Study of Attribute Selection Techniques on Naïve Bayes Spam Filters. ICDM 2008: 213-227
c23		Eduardo Valente, Isabel Rocha, Miguel Rocha: Modelling Fed-Batch Fermentation Processes: An Approach Based on Artificial Neural Networks. IWPACBB 2008: 30-39
c22		José P. Pinto, Oscar Días, Anália Lourenço, Sónia Carneiro, Eugénio C. Ferreira, Isabel Rocha, Miguel Rocha: Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis. IWPACBB 2008: 92-101
c21		Pedro Nuno Miranda de Sousa, Miguel Rocha, Paulo Cortez, Miguel Rio: Multiconstrained Optimization of Networks with Multicast and Unicast Traffic. MMNS 2008: 139-150
p1		Daniel Machado, Miguel Rocha: getALife - An Artificial Life Environment for the Evaluation of Agent-Based Systems and Evolutionary Algorithms for Reinforcement Learning. New Challenges in Applied Intelligence Technologies 2008: 35-44
	2007
j4		Miguel Rocha, Paulo Cortez, José Neves: Evolution of neural networks for classification and regression. Neurocomputing 70(16-18): 2809-2816 (2007)
j3		Pedro Nuno Miranda de Sousa, Miguel Rocha, Miguel Rio, Paulo Cortez: Automatic Provisioning of QoS Aware OSPF Configurations. JNW 2(2): 1-10 (2007)
c20		Miguel Rocha, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira: Optimization of Bacterial Strains with Variable-Sized Evolutionary Algorithms. CIBCB 2007: 331-337
c19		Miguel Rocha, Rui Mendes, Paulo Maia, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira: Evaluating Simulated Annealing Algorithms in the Optimization of Bacterial Strains. EPIA Workshops 2007: 473-484
c18		Miguel Rocha, Pedro Nuno Miranda de Sousa, Paulo Cortez, Miguel Rio: Evolutionary Computation for Quality of Service Internet Routing Optimization. EvoWorkshops 2007: 71-80
c17		Miguel Rocha, José P. Pinto, Isabel Rocha, Eugénio C. Ferreira: Evaluating Evolutionary Algorithms and Differential Evolution for the Online Optimization of Fermentation Processes. EvoBIO 2007: 236-246
c16		Miguel Rocha, Rui Mendes, Paulo Maia, Daniel Glez-Peña, Florentino Fdez-Riverola: A platform for the selection of genes in DNA microarraydata using evolutionary algorithms. GECCO 2007: 415-423
c15		Paulo Cortez, Miguel Rio, Pedro Nuno Miranda de Sousa, Miguel Rocha: Topology Aware Internet Traffic Forecasting Using Neural Networks. ICANN (2) 2007: 445-454
c14		Pedro Nuno Miranda de Sousa, Miguel Rocha, Miguel Rio, Paulo Cortez: Class-Based OSPF Traffic Engineering Inspired on Evolutionary Computation. WWIC 2007: 141-152
	2006
c13		Paulo Cortez, Miguel Rio, Miguel Rocha, Pedro Nuno Miranda de Sousa: Internet Traffic Forecasting using Neural Networks. IJCNN 2006: 2635-2642
c12		Pedro Nuno Miranda de Sousa, Miguel Rocha, Miguel Rio, Paulo Cortez: Efficient OSPF Weight Allocation for Intra-domain QoS Optimization. IPOM 2006: 37-48
	2005
c11		Miguel Rocha, Isabel Rocha, Eugénio C. Ferreira: A new representation in evolutionary algorithms for the optimization of bioprocesses. Congress on Evolutionary Computation 2005: 484-490
c10		Miguel Rocha, Paulo Cortez, José Neves: Simultaneous Evolution of Neural Network Topologies and Weights for Classification and Regression. IWANN 2005: 59-66
	2004
j2		Paulo Cortez, Miguel Rocha, José Neves: Evolving Time Series Forecasting ARMA Models. J. Heuristics 10(4): 415-429 (2004)
c9		Miguel Rocha, José Neves, Isabel Rocha, Eugénio C. Ferreira: Evolutionary Algorithms for Optimal Control in Fed-Batch Fermentation Processes. EvoWorkshops 2004: 84-93
	2003
c8		Miguel Rocha, Paulo Cortez, José Neves: Evolutionary Neural Network Learning. EPIA 2003: 24-28
c7		Miguel Rocha, Paulo Cortez, José Neves: Adaptive Learning in Changing Environments. ESANN 2003: 487-492
	2002
j1		Paulo Cortez, Miguel Rocha, José Neves: A Lamarckian Approach for Neural Network Training. Neural Processing Letters 15(2): 105-116 (2002)
	2001
c6		Paulo Cortez, Miguel Rocha, José Neves: Lamarckian training of feedforward neural networks. ESANN 2001: 153-158
c5		Miguel Rocha, Filipe Pereira, Sónia Afonso, José Neves: A Genetic and Evolutionary Programming Environment with Spatially Structured Populations and Built-In Parallelism. IEA/AIE 2001: 383-392
c4		Paulo Cortez, Miguel Rocha, José Neves: Genetic and Evolutionary Algorithms for Time Series Forecasting. IEA/AIE 2001: 393-402
	2000
c3		Miguel Rocha, Carla Vilela, José Neves: A Study of Order Based Genetic and Evolutionary Algorithms in Combinatorial Optimization Problems. IEA/AIE 2000: 601-610
c2		Miguel Rocha, Carla Vilela, Paulo Cortez, José Neves: Viewing Scheduling Problems through Genetic and Evolutionary Algorithms. IPDPS Workshops 2000: 612-619
	1999
c1		Miguel Rocha, José Neves: Preventing Premature Convergence to Local Optima in Genetic Algorithms via Random Offspring Generation. IEA/AIE 1999: 127-136

Coauthor Index

Colors in the list of coauthors

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