Isabel Rojas

Ulrike Wittig, Renate Kania, Martin Golebiewski, Maja Rey, Lei Shi, Lenneke Jong, Enkhjargal Algaa, Andreas Weidemann, Heidrun Sauer-Danzwith, Saqib Mir, Olga Krebs, Meik Bittkowski, Elina Wetsch, Isabel Rojas, Wolfgang Müller: SABIO-RK - database for biochemical reaction kinetics. Nucleic Acids Research 40(Database-Issue): 790-796 (2012)

Wolfgang Müller, Isabel Rojas, Andreas Eberhart, Peter Haase, Michael Schmidt: A-R-E: The Author-Review-Execute Environment. Procedia CS 4: 627-636 (2011)

Saqib Mir, Steffen Staab, Isabel Rojas: An Unsupervised Approach for Acquiring Ontologies and RDF Data from Online Life Science Databases. ESWC (2) 2010: 319-333

Ulrike Wittig, Renate Kania, Isabel Rojas, Wolfgang Müller: Herausforderungen bei der Extraktion von biochemischen Daten aus der Literatur. GI Jahrestagung (2) 2010: 752-757

Saqib Mir, Steffen Staab, Isabel Rojas: Web-Prospector - An Automatic, Site-Wide Wrapper Induction Approach for Scientific Deep-Web Databases. BTW 2009: 87-106

Saqib Mir, Steffen Staab, Isabel Rojas: Site-Wide Wrapper Induction for Life Science Deep Web Databases. DILS 2009: 96-112

Henriette Engelken, Martin Golebiewski, Meik Bittkowski, Fritz Hamm, Jasmin Saric, Ulrike Wittig, Wolfgang Müller, Uwe Reyle, Isabel Rojas: Flache und semantische Verarbeitung von Namen biochemischer Verbindungen. GI Jahrestagung 2009: 687-692

Andreas Weidemann, Stefan Richter, Matthias Stein, Sven Sahle, Ralph Gauges, Razif R. Gabdoulline, Irina Surovtsova, Nils Semmelrock, Bruno Besson, Isabel Rojas, Rebecca C. Wade, Ursula Kummer: SYCAMORE - a systems biology computational analysis and modeling research environment. Bioinformatics 24(12): 1463-1464 (2008)

Olga Krebs, Martin Golebiewski, Renate Kania, Saqib Mir, Jasmin Saric, Andreas Weidemann, Ulrike Wittig, Isabel Rojas: SABIO-RK: A data warehouse for biochemical reactions and their kinetics. J. Integrative Bioinformatics 4(1) (2007)

Jasmin Saric, Lars Juhl Jensen, Rossitza Ouzounova, Isabel Rojas, Peer Bork: Extraction of regulatory gene/protein networks from Medline. Bioinformatics 22(6): 645-650 (2006)

Ulrike Wittig, Martin Golebiewski, Renate Kania, Olga Krebs, Saqib Mir, Andreas Weidemann, Stefanie Anstein, Jasmin Saric, Isabel Rojas: SABIO-RK: Integration and Curation of Reaction Kinetics Data. DILS 2006: 94-103

Massimiliano Ciaramita, Aldo Gangemi, Esther Ratsch, Jasmin Saric, Isabel Rojas: Unsupervised Learning of Semantic Relations between Concepts of a Molecular Biology Ontology. IJCAI 2005: 659-664

Nestor Sosa, Andreas Kremling, Esther Ratsch, Isabel Rojas: Web-based visualisation of the transcriptional control network of Escherichia coli. In Silico Biology 4 (2004)

Jasmin Saric, Lars Juhl Jensen, Isabel Rojas: Large-scale extraction of gene regulation for model organisms in an ontological context. In Silico Biology 5 (2004)

Jasmin Saric, Lars Juhl Jensen, Peer Bork, Rossitza Ouzounova, Isabel Rojas: Extracting Regulatory Gene Expression Networks From Pubmed. ACL 2004: 191-198

Sinan Güler, Andreas Eberhart, Isabel Rojas: Web-based exchange of biochemical information. Bioinformatics 19(13): 1730-1731 (2003)

Isabel Rojas, Esther Ratsch, Jasmin Saric, Ulrike Wittig: Notes on the use of ontologies in the biochemical domain. In Silico Biology 4 (2003)

Isabel Rojas, Luca Bernardi, Esther Ratsch, Renate Kania, Ulrike Wittig, Jasmin Saric: A database system for the analysis of biochemical pathways. In Silico Biology 2: 7 (2002)

Moritz Y. Becker, Isabel Rojas: A graph layout algorithm for drawing metabolic pathways. Bioinformatics 17(5): 461-467 (2001)

Ursula Kretschmer, Volker Coors, Ulrike Spierling, Dieter Grasbon, Kerstin Schneider, Isabel Rojas, Rainer Malaka: Meeting the spirit of history. Virtual Reality, Archeology, and Cultural Heritage 2001: 141-152

Isabel Rojas: Compositional Construction of SWN models. Comput. J. 38(7): 612-621 (1995)