Burkhard Rost

Christian Schaefer, Alice Meier, Burkhard Rost, Yana Bromberg: SNPdbe: constructing an nsSNP functional impacts database. Bioinformatics 28(4): 601-602 (2012)

Tatyana Goldberg, Tobias Hamp, Burkhard Rost: LocTree2 predicts localization for all domains of life. Bioinformatics 28(18): 458-465 (2012)

Burkhard Rost, Terry Gaasterland, Thomas Lengauer, Michal Linial, Scott Markel, B. J. Morrison McKay, Reinhard Schneider, Paul Horton, Janet Kelso: Paving the future: finding suitable ISMB venues. Bioinformatics 28(19): 2556-2559 (2012)

Tobias Hamp, Burkhard Rost: Alternative Protein-Protein Interfaces Are Frequent Exceptions. PLoS Computational Biology 8(8) (2012)

Shoba Ranganathan, Christian Schönbach, Janet Kelso, Burkhard Rost, Sheila Nathan, Tin Wee Tan: Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference. BMC Bioinformatics 12(S-13): S1 (2011)

Shruti Rastogi, Burkhard Rost: LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana. Nucleic Acids Research 39(Database-Issue): 230-234 (2011)

Richard H. Lathrop, Burkhard Rost: ISCB Public Policy Statement on Open Access to Scientific and Technical Research Literature. PLoS Computational Biology 7(2) (2011)

Christian Schaefer, Avner Schlessinger, Burkhard Rost: Protein secondary structure appears to be robust under in silico evolution while protein disorder appears not to be. Bioinformatics 26(5): 625-631 (2010)

Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal: MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Research 38(Web-Server-Issue): 523-528 (2010)

Yana Bromberg, Burkhard Rost: Correlating protein function and stability through the analysis of single amino acid substitutions. BMC Bioinformatics 10(S-8): 8 (2009)

Dariusz Przybylski, Burkhard Rost: Powerful fusion: PSI-BLAST and consensus sequences. Bioinformatics 24(18): 1987-1993 (2008)

Marco Lippi, Andrea Passerini, Marco Punta, Burkhard Rost, Paolo Frasconi: MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence. Bioinformatics 24(18): 2094-2095 (2008)

Yana Bromberg, Guy Yachdav, Burkhard Rost: SNAP predicts effect of mutations on protein function. Bioinformatics 24(20): 2397-2398 (2008)

Ta-tsen Soong, Kazimierz O. Wrzeszczynski, Burkhard Rost: Physical protein-protein interactions predicted from microarrays. Bioinformatics 24(22): 2608-2614 (2008)

Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost: ISMB 2008 Toronto. PLoS Computational Biology 4(6) (2008)

Yana Bromberg, Burkhard Rost: Comprehensive in silico mutagenesis highlights functionally important residues in proteins. ECCB 2008: 207-212

Yanay Ofran, Burkhard Rost: ISIS: interaction sites identified from sequence. Bioinformatics 23(2): 13-16 (2007)

Avner Schlessinger, Marco Punta, Burkhard Rost: Natively unstructured regions in proteins identified from contact predictions. Bioinformatics 23(18): 2376-2384 (2007)

Thomas Lengauer, B. J. Morrison McKay, Burkhard Rost: ISMB/ECCB 2007: The Premier Conference on Computational Biology. PLoS Computational Biology 3(5) (2007)

Yanay Ofran, Burkhard Rost: Protein-Protein Interaction Hotspots Carved into Sequences. PLoS Computational Biology 3(7) (2007)

Avner Schlessinger, Jinfeng Liu, Burkhard Rost: Natively Unstructured Loops Differ from Other Loops. PLoS Computational Biology 3(7) (2007)

Yanay Ofran, Venkatesh Mysore, Burkhard Rost: Prediction of DNA-binding residues from sequence. ISMB/ECCB (Supplement of Bioinformatics) 2007: 347-353

Avner Schlessinger, Guy Yachdav, Burkhard Rost: PROFbval: predict flexible and rigid residues in proteins. Bioinformatics 22(7): 891-893 (2006)

Avner Schlessinger, Yanay Ofran, Guy Yachdav, Burkhard Rost: Epitome: database of structure-inferred antigenic epitopes. Nucleic Acids Research 34(Database-Issue): 777-780 (2006)

Henry R. Bigelow, Burkhard Rost: PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins. Nucleic Acids Research 34(Web-Server-Issue): 186-188 (2006)

Sven Mika, Burkhard Rost: Protein-Protein Interactions More Conserved within Species than across Species. PLoS Computational Biology 2(7) (2006)

Yanay Ofran, Guy Yachdav, Eyal Mozes, Ta-tsen Soong, Rajesh Nair, Burkhard Rost: Create and assess protein networks through molecular characteristics of individual proteins. ISMB (Supplement of Bioinformatics) 2006: 402-407

Marco Punta, Burkhard Rost: PROFcon: novel prediction of long-range contacts. Bioinformatics 21(13): 2960-2968 (2005)

Sven Mika, Burkhard Rost: NMPdb: Database of Nuclear Matrix Proteins. Nucleic Acids Research 33(Database-Issue): 160-163 (2005)

Osvaldo Graña, Volker A. Eyrich, Florencio Pazos, Burkhard Rost, Alfonso Valencia: EVAcon: a protein contact prediction evaluation service. Nucleic Acids Research 33(Web-Server-Issue): 347-351 (2005)

H. V. Jagadish, David J. States, Burkhard Rost: ISMB 2005. ISMB (Supplement of Bioinformatics) 2005: 1-2

H. V. Jagadish, David J. States, Burkhard Rost: ISMB 2005 Organization. ISMB (Supplement of Bioinformatics) 2005: 3-6

Janice I. Glasgow, Igor Jurisica, Burkhard Rost: AI and Bioinformatics. AI Magazine 25(1): 7-8 (2004)

Rajesh Nair, Burkhard Rost: Annotating Protein Function through Lexical Analysis. AI Magazine 25(1): 45-56 (2004)

Burkhard Rost, Guy Yachdav, Jinfeng Liu: The PredictProtein server. Nucleic Acids Research 32(Web-Server-Issue): 321-326 (2004)

Rajesh Nair, Burkhard Rost: LOCnet and LOCtarget: sub-cellular localization for structural genomics targets. Nucleic Acids Research 32(Web-Server-Issue): 517-521 (2004)

Jinfeng Liu, Burkhard Rost: CHOP: parsing proteins into structural domains. Nucleic Acids Research 32(Web-Server-Issue): 569-571 (2004)

Sven Mika, Burkhard Rost: NLProt: extracting protein names and sequences from papers. Nucleic Acids Research 32(Web-Server-Issue): 634-637 (2004)

Sven Mika, Burkhard Rost: Protein names precisely peeled off free text. ISMB/ECCB (Supplement of Bioinformatics) 2004: 241-247

Rajesh Nair, Phil Carter, Burkhard Rost: NLSdb: database of nuclear localization signals. Nucleic Acids Research 31(1): 397-399 (2003)

Phil Carter, Jinfeng Liu, Burkhard Rost: PEP: Predictions for Entire Proteomes. Nucleic Acids Research 31(1): 410-413 (2003)

Phil Carter, Claus A. F. Andersen, Burkhard Rost: DSSPcont: continuous secondary structure assignments for proteins. Nucleic Acids Research 31(13): 3293-3295 (2003)

Burkhard Rost, Jinfeng Liu: The PredictProtein server. Nucleic Acids Research 31(13): 3300-3304 (2003)

Volker A. Eyrich, Burkhard Rost: META-PP: single interface to crucial prediction servers. Nucleic Acids Research 31(13): 3308-3310 (2003)

Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost: EVA: evaluation of protein structure prediction servers. Nucleic Acids Research 31(13): 3311-3315 (2003)

Rajesh Nair, Burkhard Rost: LOC3D: annotate sub-cellular localization for protein structures. Nucleic Acids Research 31(13): 3337-3340 (2003)

Andrew Kernytsky, Burkhard Rost: Static benchmarking of membrane helix predictions. Nucleic Acids Research 31(13): 3642-3644 (2003)

Sven Mika, Burkhard Rost: UniqueProt: creating representative protein sequence sets. Nucleic Acids Research 31(13): 3789-3791 (2003)

Jinfeng Liu, Burkhard Rost: NORSp: predictions of long regions without regular secondary structure. Nucleic Acids Research 31(13): 3833-3835 (2003)

Burkhard Rost, Barry Honig, Alfonso Valencia: Bioinformatics in structural genomics - Editorial. Bioinformatics 18(7): 897 (2002)

Jinfeng Liu, Burkhard Rost: Target space for structural genomics revisited. Bioinformatics 18(7): 922-933 (2002)

Janice I. Glasgow, Burkhard Rost: ISMB 2002. ISMB 2002: 1-4

Rajesh Nair, Burkhard Rost: Inferring sub-cellular localization through automated lexical analysis. ISMB 2002: 78-86

Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost: EVA: continuous automatic evaluation of protein structure prediction servers. Bioinformatics 17(12): 1242-1243 (2001)

Florencio Pazos, Burkhard Rost, Alfonso Valencia: A platform for integrating threading results with protein family analyses. Bioinformatics 15(12): 1062-1063 (1999)

Burkhard Rost, Seán I. O'Donoghue: Sisyphus and prediction of protein structure. Computer Applications in the Biosciences 13(4): 345-356 (1997)

Burkhard Rost: Learning from Evolution to Predict Protein Structure. BCEC 1997: 87-101

Burkhard Rost, Rita Casadio, Piero Fariselli: Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming. ISMB 1996: 192-200

Burkhard Rost: TOPITS: Threading One-Dimensional Predictions Into Three-Dimensional Structures. ISMB 1995: 314-321

Burkhard Rost, Chris Sander, Reinhard Schneider: PHD - an automatic mail server for protein secondary structure prediction. Computer Applications in the Biosciences 10(1): 53-60 (1994)

Burkhard Rost, Chris Sander, Reinhard Schneider: Evolution and Neural Networks - Protein Secondary Structure Prediction Above 71% Accuracy. HICSS (5) 1994: 385-394

Burkhard Rost, Chris Sander: Exercising Multi-Layered Networks on Protein Secondary Structure. Int. J. Neural Syst. 3(Supplement): 209-220 (1992)