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Badrinath Roysam
2010 – today
- 2012
[j39]David Mayerich, Christopher Björnsson, Jonothan Taylor, Badrinath Roysam: NetMets: software for quantifying and visualizing errors in biological network segmentation. BMC Bioinformatics 13(S-8): S7 (2012)
[j38]Mark R. Winter, Cheng Fang, Gary Banker, Badrinath Roysam, Andrew R. Cohen: Axonal transport analysis using Multitemporal Association Tracking. I. J. Computational Biology and Drug Design 5(1): 35-48 (2012)
[j37]Leidy P. Dorado-Munoz, Miguel Velez-Reyes, Amit Mukherjee, Badrinath Roysam: A Vector SIFT Detector for Interest Point Detection in Hyperspectral Imagery. IEEE T. Geoscience and Remote Sensing 50(11): 4521-4533 (2012)
[c22]Arunachalam Narayanaswamy, Amine Merouane, Antonio Peixoto, Ena Ladi, Paul Herzmark, Ulrich Von Andrian, Ellen Robey, Badrinath Roysam: Multi-temporal Globally-Optimal Dense 3-D Cell Segmentation and Tracking from Multi-photon Time-Lapse Movies of Live Tissue Microenvironments. STIA 2012: 147-162- 2011
[j36]Amit Mukherjee, Brian Jenkins, Cheng Fang, Richard J. Radke, Gary Banker, Badrinath Roysam: Automated kymograph analysis for profiling axonal transport of secretory granules. Medical Image Analysis 15(3): 354-367 (2011)
[j35]Dirk R. Padfield, Jens Rittscher, Badrinath Roysam: Coupled minimum-cost flow cell tracking for high-throughput quantitative analysis. Medical Image Analysis 15(4): 650-668 (2011)
[j34]Yu Wang, Arunachalam Narayanaswamy, Chia-Ling Tsai, Badrinath Roysam: A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake. Neuroinformatics 9(2-3): 193-217 (2011)
[j33]Arunachalam Narayanaswamy, Yu Wang, Badrinath Roysam: 3-D Image Pre-processing Algorithms for Improved Automated Tracing of Neuronal Arbors. Neuroinformatics 9(2-3): 219-231 (2011)
[j32]Jonathan Luisi, Arunachalam Narayanaswamy, Zachary Galbreath, Badrinath Roysam: The FARSIGHT Trace Editor: An Open Source Tool for 3-D Inspection and Efficient Pattern Analysis Aided Editing of Automated Neuronal Reconstructions. Neuroinformatics 9(2-3): 305-315 (2011)
[c21]David Mayerich, Christopher Björnsson, Jonothan Taylor, Badrinath Roysam: Metrics for comparing explicit representations of interconnected biological networks. BioVis 2011: 79-86
[c20]Yu Wang, Arunachalam Narayanaswamy, Badrinath Roysam: Novel 4-D Open-Curve Active Contour and curve completion approach for automated tree structure extraction. CVPR 2011: 1105-1112
[c19]Dirk R. Padfield, Jens Rittscher, Badrinath Roysam: Quantitative biological studies enabled by robust cell tracking. ISBI 2011: 1929-1934- 2010
[j31]Liang Xiao, Lili Huang, Badrinath Roysam: Image Variational Denoising Using Gradient Fidelity on Curvelet Shrinkage. EURASIP J. Adv. Sig. Proc. 2010 (2010)
[j30]Yousef Al-Kofahi, Wiem Lassoued, William Lee, Badrinath Roysam: Improved Automatic Detection and Segmentation of Cell Nuclei in Histopathology Images. IEEE Trans. Biomed. Engineering 57(4): 841-852 (2010)
[j29]Arunachalam Narayanaswamy, Saritha Dwarakapuram, Christopher Björnsson, Barbara Cutler, William Shain, Badrinath Roysam: Robust Adaptive 3-D Segmentation of Vessel Laminae From Fluorescence Confocal Microscope Images and Parallel GPU Implementation. IEEE Trans. Med. Imaging 29(3): 583-597 (2010)
[c18]
[c17]Arunachalam Narayanaswamy, Ena Ladi, Yousef Al-Kofahi, Y. Chen, Christopher D. Carothers, Ellen Robey, Badrinath Roysam: 5-D imaging and parallel automated analysis of cellular events in living immune tissue microenvironments. ISBI 2010: 1435-1438
[c16]Liang Xiao, Xiaosong Yuan, Zack Galbreath, Badrinath Roysam: Automatic and Reliable Extraction of Dendrite Backbone from Optical Microscopy Images. LSMS/ICSEE 2010: 100-112
2000 – 2009
- 2009
[j28]Dirk R. Padfield, Jens Rittscher, Nick Thomas, Badrinath Roysam: Spatio-temporal cell cycle phase analysis using level sets and fast marching methods. Medical Image Analysis 13(1): 143-155 (2009)
[j27]Badrinath Roysam, William Shain, Giorgio A. Ascoli: The Central Role of Neuroinformatics in the National Academy of Engineering's Grandest Challenge: Reverse Engineer the Brain. Neuroinformatics 7(1): 1-5 (2009)
[j26]Xiaosong Yuan, Joshua T. Trachtenberg, Steve M. Potter, Badrinath Roysam: MDL Constrained 3-D Grayscale Skeletonization Algorithm for Automated Extraction of Dendrites and Spines from Fluorescence Confocal Images. Neuroinformatics 7(4): 213-232 (2009)
[j25]Andrew R. Cohen, Christopher Björnsson, Sally Temple, Gary Banker, Badrinath Roysam: Automatic Summarization of Changes in Biological Image Sequences Using Algorithmic Information Theory. IEEE Trans. Pattern Anal. Mach. Intell. 31(8): 1386-1403 (2009)
[j24]Amit Mukherjee, Miguel Velez-Reyes, Badrinath Roysam: Interest Points for Hyperspectral Image Data. IEEE T. Geoscience and Remote Sensing 47(3): 748-760 (2009)
[c15]Dirk R. Padfield, Jens Rittscher, Badrinath Roysam: Coupled Minimum-Cost Flow Cell Tracking. IPMI 2009: 374-385- 2008
[j23]Harihar Narasimha-Iyer, Vijay Mahadevan, James M. Beach, Badrinath Roysam: Improved Detection of the Central Reflex in Retinal Vessels Using a Generalized Dual-Gaussian Model and Robust Hypothesis Testing. IEEE Transactions on Information Technology in Biomedicine 12(3): 406-410 (2008)
[j22]Chia-Ling Tsai, Benjamin Madore, Matthew J. Leotta, Michal Sofka, Gehua Yang, Anna Majerovics, Howard L. Tanenbaum, Charles V. Stewart, Badrinath Roysam: Automated Retinal Image Analysis Over the Internet. IEEE Transactions on Information Technology in Biomedicine 12(4): 480-487 (2008)
[c14]Dirk R. Padfield, Jens Rittscher, Badrinath Roysam: Spatio-temporal cell segmentation and tracking for automated screening. ISBI 2008: 376-379
[c13]Andrew R. Cohen, Christopher Björnsson, Ying Chen, Gary Banker, Ena Ladi, Ellen Robey, Sally Temple, Badrinath Roysam: Automatic summarization of changes in image sequences using algorithmic information theory. ISBI 2008: 859-862- 2007
[j21]Harihar Narasimha-Iyer, James M. Beach, Bahram Khoobehi, Badrinath Roysam: Automatic Identification of Retinal Arteries and Veins From Dual-Wavelength Images Using Structural and Functional Features. IEEE Trans. Biomed. Engineering 54(8): 1427-1435 (2007)
[j20]Harihar Narasimha-Iyer, Ali Can, Badrinath Roysam, Howard L. Tanenbaum, Anna Majerovics: Integrated Analysis of Vascular and Nonvascular Changes From Color Retinal Fundus Image Sequences. IEEE Trans. Biomed. Engineering 54(8): 1436-1445 (2007)
[j19]Nicolas Roussel, Christine A. Morton, Fern P. Finger, Badrinath Roysam: A Computational Model for C. elegans Locomotory Behavior: Application to Multiworm Tracking. IEEE Trans. Biomed. Engineering 54(10): 1786-1797 (2007)
[j18]James Alexander Tyrrell, Emmanuelle di Tomaso, Daniel Fuja, Ricky Tong, Kevin Kozak, Rakesh K. Jain, Badrinath Roysam: Robust 3-D Modeling of Vasculature Imagery Using Superellipsoids. IEEE Trans. Med. Imaging 26(2): 223-237 (2007)
[c12]Gang Lin, Yousef Al-Kofahi, James Alexander Tyrrell, Christopher Björnsson, William Shain, Badrinath Roysam: Automated 3-D Quantification of Brain Tissue at tThe Cellular Scale from Multi-Parameter Confocal Microscopy Images. ISBI 2007: 1040-1043- 2006
[j17]Harihar Narasimha-Iyer, Ali Can, Badrinath Roysam, Charles V. Stewart, Howard L. Tanenbaum, Anna Majerovics, Hanumant Singh: Robust detection and classification of longitudinal changes in color retinal fundus images for monitoring diabetic retinopathy. IEEE Trans. Biomed. Engineering 53(6): 1084-1098 (2006)
[j16]Omar Al-Kofahi, Richard J. Radke, Badrinath Roysam, Gary Banker: Automated semantic analysis of changes in image sequences of neurons in culture. IEEE Trans. Biomed. Engineering 53(6): 1109-1123 (2006)
[c11]James Alexander Tyrrell, Badrinath Roysam, Emmanuelle di Tomaso, Ricky Tong, Edward B. Brown, Rakesh K. Jain: Robust 3-D modeling of tumor microvasculature using superellipsoids. ISBI 2006: 185-188
[c10]Dirk R. Padfield, Jens Rittscher, Thomas Sebastian, Nick Thomas, Badrinath Roysam: Spatio-temporal cell cycle analysis using 3D level set segmentation of unstained nuclei in line scan confocal fluorescence images. ISBI 2006: 1036-1039- 2005
[j15]Richard J. Radke, Srinivas Andra, Omar Al-Kofahi, Badrinath Roysam: Image change detection algorithms: a systematic survey. IEEE Transactions on Image Processing 14(3): 294-307 (2005)
[j14]M.-A. Abdul-Karim, Badrinath Roysam, Natalie M. Dowell-Mesfin, A. Jeromin, Murat Yuksel, Shivkumar Kalyanaraman: Automatic Selection of Parameters for Vessel/Neurite Segmentation Algorithms. IEEE Transactions on Image Processing 14(9): 1338-1350 (2005)- 2004
[j13]Gang Lin, Charles V. Stewart, Badrinath Roysam, Kenneth Fritzsche, Gehua Yang, Howard L. Tanenbaum: Predictive scheduling algorithms for real-time feature extraction and spatial referencing: application to retinal image sequences. IEEE Trans. Biomed. Engineering 51(1): 115-125 (2004)
[j12]Chia-Ling Tsai, Charles V. Stewart, Howard L. Tanenbaum, Badrinath Roysam: Model-Based Method for Improving the Accuracy and Repeatability of Estimating Vascular Bifurcations and Crossovers From Retinal Fundus Images. IEEE Transactions on Information Technology in Biomedicine 8(2): 122-130 (2004)
[j11]James Alexander Tyrrell, J. M. LaPre, Christopher D. Carothers, Badrinath Roysam, Charles V. Stewart: Efficient Migration of Complex Off-Line Computer Vision Software to Real-Time System Implementation on Generic Computer Hardware. IEEE Transactions on Information Technology in Biomedicine 8(2): 142-153 (2004)
[j10]Vijay Mahadevan, Harihar Narasimha-Iyer, Badrinath Roysam, Howard L. Tanenbaum: Robust model-based vasculature detection in noisy biomedical images. IEEE Transactions on Information Technology in Biomedicine 8(3): 360-376 (2004)- 2003
[j9]Hong Shen, Charles V. Stewart, Badrinath Roysam, Gang Lin, Howard L. Tanenbaum: Frame-Rate Spatial Referencing Based on Invariant Indexing and Alignment with Application to Online Retinal Image Registration. IEEE Trans. Pattern Anal. Mach. Intell. 25(3): 379-384 (2003)
[j8]Khalid A. Al-Kofahi, Ali Can, Sharie Lasek, Donald H. Szarowski, Natalie M. Dowell-Mesfin, William Shain, James N. Turner, Badrinath Roysam: Median-based robust algorithms for tracing neurons from noisy confocal microscope images. IEEE Transactions on Information Technology in Biomedicine 7(4): 302-317 (2003)
[j7]Charles V. Stewart, Chia-Ling Tsai, Badrinath Roysam: The Dual Bootstrap Iterative Closest Point Algorithm with Application to Retinal Image Registration. IEEE Trans. Med. Imaging 22(11): 1379-1394 (2003)
[c9]Chia-Ling Tsai, Anna Majerovics, Charles V. Stewart, Badrinath Roysam: Disease-Oriented Evaluation of Dual-Bootstrap Retinal Image Registration. MICCAI (1) 2003: 754-761- 2002
[j6]Ali Can, Charles V. Stewart, Badrinath Roysam, Howard L. Tanenbaum: A Feature-Based, Robust, Hierarchical Algorithm for Registering Pairs of Images of the Curved Human Retina. IEEE Trans. Pattern Anal. Mach. Intell. 24(3): 347-364 (2002)
[j5]Ali Can, Charles V. Stewart, Badrinath Roysam, Howard L. Tanenbaum: A Feature-Based Technique for Joint Linear Estimation of High-Order Image-to-Mosaic Transformations: Mosaicing the Curved Human Retina. IEEE Trans. Pattern Anal. Mach. Intell. 24(3): 412-419 (2002)
[j4]Khalid A. Al-Kofahi, Sharie Lasek, Donald H. Szarowski, Christopher J. Pace, George Nagy, James N. Turner, Badrinath Roysam: Rapid automated three-dimensional tracing of neurons from confocal image stacks. IEEE Transactions on Information Technology in Biomedicine 6(2): 171-187 (2002)
[c8]Chia-Ling Tsai, Charles V. Stewart, Badrinath Roysam, Howard L. Tanenbaum: Covariance-driven retinal image registration initialized from small sets of landmark correspondences. ISBI 2002: 333-336- 2001
[j3]Hong Shen, Badrinath Roysam, Charles V. Stewart, James N. Turner, Howard L. Tanenbaum: Optimal scheduling of tracing computations for real-time vascular landmark extraction from retinal fundus images. IEEE Transactions on Information Technology in Biomedicine 5(1): 77-91 (2001)
[c7]Hong Shen, Charles V. Stewart, Badrinath Roysam, Gang Lin, Howard L. Tanenbaum: Frame-Rate Spatial Referencing Based on Invariant Indexing and Alignment with Application to Laser Retinal Surgery. CVPR (1) 2001: 79-86- 2000
[c6]Ali Can, Charles V. Stewart, Badrinath Roysam, Howard L. Tanenbaum: A Feature-Based Technique for Joint, Linear Estimation of High-Order Image-to-Mosaic Transformations: Application to Mosaicing the Curved Human Retina. CVPR 2000: 2585-2591
1990 – 1999
- 1999
[j2]Ali Can, Hong Shen, James N. Turner, Howard L. Tanenbaum, Badrinath Roysam: Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms. IEEE Transactions on Information Technology in Biomedicine 3(2): 125-138 (1999)
[c5]Charles V. Stewart, Badrinath Roysam, Ali Can: Robust Hierarchical Algorithm for Constructing a Mosaic from Images of the Curved Human Retina. CVPR 1999: 2286-2293- 1997
[j1]James N. Turner, Hakan Ancin, Douglas E. Becker, Donald H. Szarowski, Maria Holmes, Nate O'Connor, Michael Wang, Timothy Holmes, Badrinath Roysam: Automated image analysis technologies for biological 3D light microscopy. Int. J. Imaging Systems and Technology 8(3): 240-254 (1997)- 1995
[c4]Robert W. Mackin Jr., Badrinath Roysam, James N. Turner: Adaptive 3-D segmentation algorithms for microscope images using local in-focus, and contrast features: application to Pap smears. ICIP (3) 1995: 160-163
[c3]Hakan Ancin, Thomas E. Dufresne, Gregg M. Ridder, James N. Turner, Badrinath Roysam: An improved watershed algorithm for counting objects in noisy, anisotropic 3-D biological images. ICIP (3) 1995: 172-175
[c2]Douglas E. Becker, James N. Turner, Howard L. Tanenbaum, Badrinath Roysam: Real-time image processing algorithms for an automated retinal laser surgery system. ICIP 1995: 426-429- 1993
[c1]Ronald K. McMurdy, Badrinath Roysam: Improving RAID-5 Performance by Un-striping Moderate-Sized Files. ICPP 1993: 279-282
Coauthor Index
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last updated on 2013-05-01 22:58 CEST by the dblp team



