Daniel L. Rubin

Kalpana M. Kanal, Elizabeth A. Krupinski, Eric A. Berns, William R. Geiser, Andrew Karellas, Martha B. Mainiero, Melissa C. Martin, Samir B. Patel, Daniel L. Rubin, Jon D. Shepard, Eliot L. Siegel, Judith A. Wolfman, Tariq A. Mian, Mary C. Mahoney, Margaret Wyatt: ACR-AAPM-SIIM Practice Guideline for Determinants of Image Quality in Digital Mammography. J. Digital Imaging 26(1): 10-25 (2013)

Bethany Percha, Houssam Nassif, Jafi Lipson, Elizabeth S. Burnside, Daniel L. Rubin: Automatic classification of mammography reports by BI-RADS breast tissue composition class. JAMIA 19(5): 913-916 (2012)

Matthew W. Shore, Daniel L. Rubin, Charles E. Kahn Jr.: Integration of Imaging Signs into RadLex. J. Digital Imaging 25(1): 50-55 (2012)

Jiajing Xu, Jessica S. Faruque, Christopher F. Beaulieu, Daniel L. Rubin, Sandy Napel: A Comprehensive Descriptor of Shape: Method and Application to Content-Based Retrieval of Similar Appearing Lesions in Medical Images. J. Digital Imaging 25(1): 121-128 (2012)

Kleberson A. Serique, Alan Snyder, Debra Willrett, Daniel L. Rubin, Dilvan A. Moreira: Using the Semantic Web and Web Apps to Connect Radiologists and Oncologists. WETICE 2012: 480-485

Jessica D. Tenenbaum, Patricia L. Whetzel, Kent Anderson, Charles D. Borromeo, Ivo D. Dinov, Davera Gabriel, Beth A. Kirschner, Barbara Mirel, Timothy D. Morris, Natasha Fridman Noy, Csongor Nyulas, David Rubenson, Paul R. Saxman, Harpreet Singh, Nancy Whelan, Zach Wright, Brian D. Athey, Michael J. Becich, Geoffrey S. Ginsburg, Mark A. Musen, Kevin A. Smith, Alice F. Tarantal, Daniel L. Rubin, Peter Lyster: The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. Journal of Biomedical Informatics 44(1): 137-145 (2011)

Samson W. Tu, Mor Peleg, Simona Carini, Michael Bobak, Jessica Ross, Daniel L. Rubin, Ida Sim: A practical method for transforming free-text eligibility criteria into computable criteria. Journal of Biomedical Informatics 44(2): 239-250 (2011)

Daniel L. Rubin, Adam E. Flanders, Woojin Kim, Khan M. Siddiqui, Charles E. Kahn: Ontology-Assisted Analysis of Web Queries to Determine the Knowledge Radiologists Seek. J. Digital Imaging 24(1): 160-164 (2011)

Ceyhun Burak Akgül, Daniel L. Rubin, Sandy Napel, Christopher F. Beaulieu, Hayit Greenspan, Burak Acar: Content-Based Image Retrieval in Radiology: Current Status and Future Directions. J. Digital Imaging 24(2): 208-222 (2011)

Andrew S. Wu, Bao H. Do, Jinsuh Kim, Daniel L. Rubin: Evaluation of Negation and Uncertainty Detection and its Impact on Precision and Recall in Search. J. Digital Imaging 24(2): 234-242 (2011)

Daniel Korenblum, Daniel L. Rubin, Sandy Napel, Cesar Rodriguez, Christopher F. Beaulieu: Managing Biomedical Image Metadata for Search and Retrieval of Similar Images. J. Digital Imaging 24(4): 739-748 (2011)

Jessica S. Faruque, Daniel L. Rubin, Christopher F. Beaulieu, Jarrett Rosenberg, Aya Kamaya, Grace Tye, Sandy Napel, Ronald M. Summers: A Scalable Reference Standard of Visual Similarity for a Content-Based Image Retrieval System. HISB 2011: 158-165

Francisco Gimenez, Jiajing Xu, Yi Liu, Tiffany Ting Liu, Christopher F. Beaulieu, Daniel L. Rubin, Sandy Napel: On the Feasibility of Predicting Radiological Observations from Computational Imaging Features of Liver Lesions in CT Scans. HISB 2011: 346-350

David S. Channin, Pattanasak Mongkolwat, Vladimir Kleper, Kastubh Sepukar, Daniel L. Rubin: The caBIG^TM Annotation and Image Markup Project. J. Digital Imaging 23(2): 217-225 (2010)

Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Sharath R. Cholleti, Tony C. Pan, Patrick M. Widener, Ashish Sharma, Tom Mikkelsen, Adam E. Flanders, Daniel L. Rubin, Erwin G. Van Meir, Tahsin M. Kurç, Carlos S. Moreno, Daniel J. Brat, Joel H. Saltz: An Integrative Approach for In Silico Glioma Research. IEEE Trans. Biomed. Engineering 57(10): 2617-2621 (2010)

Tharam S. Dillon, Daniel L. Rubin, William Gallagher, Amandeep S. Sidhu, Alexey Tsymbal (Eds.): IEEE 23rd International Symposium on Computer-Based Medical Systems (CBMS 2010), Perth, Australia, October 12-15, 2010. IEEE 2010, isbn 978-1-4244-9167-4

Daniel L. Rubin, Ion-Florin Talos, Michael Halle, Mark A. Musen, Ron Kikinis: Computational neuroanatomy: ontology-based representation of neural components and connectivity. BMC Bioinformatics 10(S-2) (2009)

Nigam H. Shah, Nipun Bhatia, Clement Jonquet, Daniel L. Rubin, Annie P. Chiang, Mark A. Musen: Comparison of concept recognizers for building the Open Biomedical Annotator. BMC Bioinformatics 10(S-9): 14 (2009)

Daniel L. Rubin, Pattanasak Mongkolwat, Vladimir Kleper, Kaustubh Supekar, David S. Channin: Annotation and Image Markup: Accessing and Interoperating with the Semantic Content in Medical Imaging. IEEE Intelligent Systems 24(1): 57-65 (2009)

Charles E. Kahn Jr., Daniel L. Rubin: Research Paper: Automated Semantic Indexing of Figure Captions to Improve Radiology Image Retrieval. JAMIA 16(3): 380-386 (2009)

Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Daniel L. Rubin, Margaret-Anne D. Storey, Christopher G. Chute, Mark A. Musen: BioPortal: ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research 37(Web-Server-Issue): 170-173 (2009)

Daniel L. Rubin, Nigam Shah, Natalya Fridman Noy: Biomedical ontologies: a functional perspective. Briefings in Bioinformatics 9(1): 75-90 (2008)

Graham L. Poulter, Daniel L. Rubin, Russ B. Altman, Cathal Seoighe: MScanner: a classifier for retrieving Medline citations. BMC Bioinformatics 9 (2008)

Ion-Florin Talos, Daniel L. Rubin, Michael Halle, Mark A. Musen, Ron Kikinis: A prototype symbolic model of canonical functional neuroanatomy of the motor system. Journal of Biomedical Informatics 41(2): 251-263 (2008)

Daniel L. Rubin: Creating and Curating a Terminology for Radiology: Ontology Modeling and Analysis. J. Digital Imaging 21(4): 355-362 (2008)

Kaustubh Supekar, Vinod Menon, Daniel L. Rubin, Mark A. Musen, Michael D. Greicius: Network Analysis of Intrinsic Functional Brain Connectivity in Alzheimer's Disease. PLoS Computational Biology 4(6) (2008)

Natalya Fridman Noy, Daniel L. Rubin: Translating the Foundational Model of Anatomy into OWL. J. Web Sem. 6(2): 133-136 (2008)

Daniel L. Rubin, Dilvan A. Moreira, Pradip Kanjamala, Mark A. Musen: BioPortal: A Web Portal to Biomedical Ontologies. AAAI Spring Symposium: Symbiotic Relationships between Semantic Web and Knowledge Engineering 2008: 74-77

Daniel L. Rubin, Pattanasak Mongkolwat, Vladimir Kleper, Kaustubh Supekar, David S. Channin: Medical Imaging on the Semantic Web: Annotation and Image Markup. AAAI Spring Symposium: Semantic Scientific Knowledge Integration 2008: 93-98

Natalya Fridman Noy, Nigam Shah, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Michael Montegut, Daniel L. Rubin, Cherie Youn, Mark A. Musen: BioPortal: A Web Repository for Biomedical Ontologies and Data Resources. International Semantic Web Conference (Posters & Demos) 2008

Nigam H. Shah, Daniel L. Rubin, Inigo Espinosa, Kelli Montgomery, Mark A. Musen: Annotation and query of tissue microarray data using the NCI Thesaurus. BMC Bioinformatics 8 (2007)

Woei-Jyh Lee, Louiqa Raschid, Padmini Srinivasan, Nigam Shah, Daniel L. Rubin, Natasha Fridman Noy: Using Annotations from Controlled Vocabularies to Find Meaningful Associations. DILS 2007: 247-263

Kaustubh Supekar, Daniel L. Rubin, Natasha F. Noy, Mark A. Musen: Knowledge Zone: A Public Repository of Peer-Reviewed Biomedical Ontologies. MedInfo 2007: 812-816

Daniel L. Rubin, Olivier Dameron, Yasser Bashir, David Grossman, Parvati Dev, Mark A. Musen: Using ontologies linked with geometric models to reason about penetrating injuries. Artificial Intelligence in Medicine 37(3): 167-176 (2006)

Charles E. Kahn, David S. Channin, Daniel L. Rubin: An Ontology for PACS Integration. J. Digital Imaging 19(4): 316-327 (2006)

Daniel L. Rubin, Caroline F. Thorn, Teri E. Klein, Russ B. Altman: Application of Information Technology: A Statistical Approach to Scanning the Biomedical Literature for Pharmacogenetics Knowledge. JAMIA 12(2): 121-129 (2005)

Mor Peleg, Daniel L. Rubin, Russ B. Altman: Research Paper: Using Petri Net Tools to Study Properties and Dynamics of Biological Systems. JAMIA 12(2): 181-199 (2005)

Natalya Fridman Noy, Daniel L. Rubin, Mark A. Musen: Making Biomedical Ontologies and Ontology Repositories Work. IEEE Intelligent Systems 19(6): 78-81 (2004)

Elizabeth S. Burnside, Daniel L. Rubin, Ross D. Shachter: Improving a Bayesian network's ability to predict the probability of malignancy of microcalcifications on mammography. CARS 2004: 1021-1026

Micheal Hewett, Diane E. Oliver, Daniel L. Rubin, Katrina L. Easton, Joshua M. Stuart, Russ B. Altman, Teri E. Klein: PharmGKB: the Pharmacogenetics Knowledge Base. Nucleic Acids Research 30(1): 163-165 (2002)

Daniel L. Rubin, Farhad Shafa, Diane E. Oliver, Micheal Hewett, Russ B. Altman: Representing genetic sequence data for pharmacogenomics: an evolutionary approach using ontological and relational models. ISMB 2002: 207-215

Diane E. Oliver, Daniel L. Rubin, Joshua M. Stuart, Micheal Hewett, Teri E. Klein, Russ B. Altman: Ontology Development for a Pharmacogenetics Knowledge Base. Pacific Symposium on Biocomputing 2002: 65-76

Daniel L. Rubin, Micheal Hewett, Diane E. Oliver, Teri E. Klein, Russ B. Altman: Automating Data Acquisition into Ontologies from Pharmacogenetics Relational Data Sources Using Declarative Object Definitions and XML. Pacific Symposium on Biocomputing 2002: 88-99