John K. Salmon

Ron O. Dror, J. P. Grossman, Kenneth M. Mackenzie, Brian Towles, Edmond Chow, John K. Salmon, Cliff Young, Joseph A. Bank, Brannon Batson, David E. Shaw, Jeffrey Kuskin, Richard H. Larson, Mark A. Moraes, David E. Shaw: Overcoming Communication Latency Barriers in Massively Parallel Scientific Computation. IEEE Micro 31(3): 8-19 (2011)

John K. Salmon, Mark A. Moraes, Ron O. Dror, David E. Shaw: Parallel random numbers: as easy as 1, 2, 3. SC 2011: 16

Ron O. Dror, J. P. Grossman, Kenneth M. Mackenzie, Brian Towles, Edmond Chow, John K. Salmon, Cliff Young, Joseph A. Bank, Brannon Batson, Martin M. Deneroff, Jeffrey Kuskin, Richard H. Larson, Mark A. Moraes, David E. Shaw: Exploiting 162-Nanosecond End-to-End Communication Latency on Anton. SC 2010: 1-12

David E. Shaw, Ron O. Dror, John K. Salmon, J. P. Grossman, Kenneth M. Mackenzie, Joseph A. Bank, Cliff Young, Martin M. Deneroff, Brannon Batson, Kevin J. Bowers, Edmond Chow, Michael P. Eastwood, Doug Ierardi, John L. Klepeis, Jeffrey Kuskin, Richard H. Larson, Kresten Lindorff-Larsen, Paul Maragakis, Mark A. Moraes, Stefano Piana, Yibing Shan, Brian Towles: Millisecond-scale molecular dynamics simulations on Anton. SC 2009

David E. Shaw, Ron O. Dror, John K. Salmon, J. P. Grossman, Kenneth M. Mackenzie, Joseph A. Bank, Cliff Young, Martin M. Deneroff, Brannon Batson, Kevin J. Bowers, Edmond Chow, Michael P. Eastwood, Doug Ierardi, John L. Klepeis, Jeffrey Kuskin, Richard H. Larson, Kresten Lindorff-Larsen, Paul Maragakis, Mark A. Moraes, Stefano Piana, Yibing Shan, Brian Towles: Millisecond-scale molecular dynamics simulations on Anton. SC 2009

Cliff Young, Joseph A. Bank, Ron O. Dror, J. P. Grossman, John K. Salmon, David E. Shaw: A 32x32x32, spatially distributed 3D FFT in four microseconds on Anton. SC 2009

David E. Shaw, Martin M. Deneroff, Ron O. Dror, Jeffrey Kuskin, Richard H. Larson, John K. Salmon, Cliff Young, Brannon Batson, Kevin J. Bowers, Jack C. Chao, Michael P. Eastwood, Joseph Gagliardo, J. P. Grossman, Richard C. Ho, Doug Ierardi, István Kolossváry, John L. Klepeis, Timothy Layman, Christine McLeavey, Mark A. Moraes, Rolf Mueller, Edward C. Priest, Yibing Shan, Jochen Spengler, Michael Theobald, Brian Towles, Stanley C. Wang: Anton, a special-purpose machine for molecular dynamics simulation. Commun. ACM 51(7): 91-97 (2008)

J. P. Grossman, Cliff Young, Joseph A. Bank, Kenneth M. Mackenzie, Doug Ierardi, John K. Salmon, Ron O. Dror, David E. Shaw: Simulation and embedded software development for Anton, a parallel machine with heterogeneous multicore ASICs. CODES+ISSS 2008: 125-130

Richard H. Larson, John K. Salmon, Ron O. Dror, Martin M. Deneroff, Cliff Young, J. P. Grossman, Yibing Shan, John L. Klepeis, David E. Shaw: High-throughput pairwise point interactions in Anton, a specialized machine for molecular dynamics simulation. HPCA 2008: 331-342

J. P. Grossman, John K. Salmon, Richard C. Ho, Doug Ierardi, Brian Towles, Brannon Batson, Jochen Spengler, Stanley C. Wang, Rolf Mueller, Michael Theobald, Cliff Young, Joseph Gagliardo, Martin M. Deneroff, Ron O. Dror, David E. Shaw: Hierarchical simulation-based verification of Anton, a special-purpose parallel machine. ICCD 2008: 340-347

David E. Shaw, Martin M. Deneroff, Ron O. Dror, Jeffrey Kuskin, Richard H. Larson, John K. Salmon, Cliff Young, Brannon Batson, Kevin J. Bowers, Jack C. Chao, Michael P. Eastwood, Joseph Gagliardo, J. P. Grossman, Richard C. Ho, Doug Ierardi, István Kolossváry, John L. Klepeis, Timothy Layman, Christine McLeavey, Mark A. Moraes, Rolf Mueller, Edward C. Priest, Yibing Shan, Jochen Spengler, Michael Theobald, Brian Towles, Stanley C. Wang: Anton, a special-purpose machine for molecular dynamics simulation. ISCA 2007: 1-12

Kevin J. Bowers, Edmond Chow, Huafeng Xu, Ron O. Dror, Michael P. Eastwood, Brent A. Gregersen, John L. Klepeis, István Kolossváry, Mark A. Moraes, Federico D. Sacerdoti, John K. Salmon, Yibing Shan, David E. Shaw: Molecular dynamics - Scalable algorithms for molecular dynamics simulations on commodity clusters. SC 2006: 84

John K. Salmon, Thomas L. Sterling, Rajesh Bordawekar, Christopher Stein: Scaling of Beowulf-Class Distributed Systems. HPDC 1998: 368-369

John K. Salmon, Christopher Stein, Thomas L. Sterling: Scaling of Beowulf-class Distributed Systems. SC 1998: 51

David W. Pfitzner, John K. Salmon, Thomas L. Sterling: Halo World: Tools for Parallel Cluster Finding in Astrophysical N-body Simulations. Data Min. Knowl. Discov. 1(4): 419-438 (1997)

Michael S. Warren, Donald J. Becker, M. Patrick Goda, John K. Salmon, Thomas L. Sterling: Parallel Supercomputing with Commodity Components. PDPTA 1997: 1372-1381

John K. Salmon, Michael S. Warren: Parallel, Out-of-Core Methods for N-body Simulation. PPSC 1997

Michael S. Warren, John K. Salmon, Donald J. Becker, M. Patrick Goda, Thomas L. Sterling, W. Winckelmans: Pentium Pro Inside: I. A Treecode at 430 Gigaflops on ASCI Red, II. Price/Performance of $50/Mflop on Loki and Hyglac. SC 1997: 61

David W. Pfitzner, John K. Salmon: Parallel Halo Finding in N-Body Cosmology Simulations. KDD 1996: 26-31

G. S. Winckelmans, John K. Salmon, Michael S. Warren, A. Leonard: The Fast Solution of Three-Dimensional Fluid Dynamical N-Body Problems Using Parallel Tree Codes: Vortex Element Method and Boundary Element Method. PPSC 1995: 301-306

Michael S. Warren, John K. Salmon: A Parallel, Portable and Versatile Treecode. PPSC 1995: 319-324

Michael S. Warren, John K. Salmon: A parallel hashed Oct-Tree N-body algorithm. SC 1993: 12-21

Michael S. Warren, John K. Salmon: Astrophysical N-body Simulations Using Hierarchical Tree Data Structures. SC 1992: 570-576

Geoffrey Charles Fox, Paul Hipes, John K. Salmon: Practical parallel supercomputing: examples from chemistry and physics. SC 1989: 58-69