Chris Sander

Robbie P. Joosten, Tim A. H. te Beek, Elmar Krieger, Maarten L. Hekkelman, Rob W. W. Hooft, Reinhard Schneider, Chris Sander, Gert Vriend: A series of PDB related databases for everyday needs. Nucleic Acids Research 39(Database-Issue): 411-419 (2011)

Ethan G. Cerami, Benjamin E. Gross, Emek Demir, Igor Rodchenkov, Özgün Babur, Nadia Anwar, Nikolaus Schultz, Gary D. Bader, Chris Sander: Pathway Commons, a web resource for biological pathway data. Nucleic Acids Research 39(Database-Issue): 685-690 (2011)

Debora S. Marks, Lucy J. Colwell, Robert P. Sheridan, Thomas A. Hopf, Andrea Pagnani, Riccardo Zecchina, Chris Sander: 3D Protein Structure Predicted from Sequence. CoRR abs/1110.5091 (2011)

Ozgun Babur, Ugur Dogrusöz, Emek Demir, Chris Sander: ChiBE: interactive visualization and manipulation of BioPAX pathway models. Bioinformatics 26(3): 429-431 (2010)

Ramon Aragues, Chris Sander, Baldo Oliva: Predicting cancer involvement of genes from heterogeneous data. BMC Bioinformatics 9 (2008)

Doron Betel, Manda Wilson, Aaron Gabow, Debora S. Marks, Chris Sander: The microRNA.org resource: targets and expression. Nucleic Acids Research 36(Database-Issue): 149-153 (2008)

Maureen E. Higgins, Martine Claremont, John E. Major, Chris Sander, Alex E. Lash: CancerGenes: a gene selection resource for cancer genome projects. Nucleic Acids Research 35(Database-Issue): 721-726 (2007)

Jomol P. Mathew, Barry S. Taylor, Gary D. Bader, Saiju Pyarajan, Marco Antoniotti, Arul M. Chinnaiyan, Chris Sander, Steven J. Burakoff, Bud Mishra: From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research. PLoS Computational Biology 3(2) (2007)

Doron Betel, Robert P. Sheridan, Debora S. Marks, Chris Sander: Computational Analysis of Mouse piRNA Sequence and Biogenesis. PLoS Computational Biology 3(11) (2007)

Ethan G. Cerami, Gary D. Bader, Benjamin E. Gross, Chris Sander: cPath: open source software for collecting, storing, and querying biological pathways. BMC Bioinformatics 7: 497 (2006)

Gary D. Bader, Michael P. Cary, Chris Sander: Pathguide: a Pathway Resource List. Nucleic Acids Research 34(Database-Issue): 504-506 (2006)

Jose M. G. Vilar, Ronald Jansen, Chris Sander: Signal Processing in the TGF-β Superfamily Ligand-Receptor Network. PLoS Computational Biology 2(1) (2006)

Chris Sander: Growth in Bioinformatics. Bioinformatics 19(1): 1 (2003)

Ioannis Iliopoulos, Sophia Tsoka, Miguel A. Andrade, Anton J. Enright, Mark Carroll, Patrick Poullet, Vassilis J. Promponas, Theodore Liakopoulos, Giorgos Palaios, Claude Pasquier, Stavros J. Hamodrakas, Javier Tamames, Asutosh T. Yagnik, Anna Tramontano, Damien Devos, Christian Blaschke, Alfonso Valencia, David Brett, David Martin, Christophe Leroy, Isidore Rigoutsos, Chris Sander, Christos A. Ouzounis: Evaluation of annotation strategies using an entire genome sequence. Bioinformatics 19(6): 717-726 (2003)

Gabriel F. Berriz, Oliver D. King, Barbara Bryant, Chris Sander, Frederick P. Roth: Characterizing gene sets with FuncAssociate. Bioinformatics 19(18): 2502-2504 (2003)

Chris Sander: The Journal Bioinformatics, key medium for computational biology. Bioinformatics 18(1): 1-2 (2002)

Chris Sander: Bioinformatics - Challenges in 2001. Bioinformatics 17(1): 1-2 (2001)

Vassilis J. Promponas, Anton J. Enright, Sophia Tsoka, David P. Kreil, Christophe Leroy, Stavros J. Hamodrakas, Chris Sander, Christos A. Ouzounis: CAST: an iterative algorithm for the complexity analysis of sequence tracts. Bioinformatics 16(10): 915-922 (2000)

Miguel A. Andrade, N. P. Brown, Christophe Leroy, S. Hörsch, Antoine de Daruvar, C. Reich, A. Franchini, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis, Chris Sander: Automated genome sequence analysis and annotation. Bioinformatics 15(5): 391-412 (1999)

Liisa Holm, Chris Sander: Protein folds and families: sequence and structure alignments. Nucleic Acids Research 27(1): 244-247 (1999)

N. P. Brown, Chris Sander, Peer Bork: Frame: detection of genomic sequencing errors. Bioinformatics 14(4): 367-371 (1998)

N. P. Brown, Christophe Leroy, Chris Sander: MView: a web-compatible database search or multiple alignment viewer. Bioinformatics 14(4): 380-381 (1998)

Liisa Holm, Chris Sander: Removing near-neighbour redundancy from large protein sequence collections. Bioinformatics 14(5): 423-429 (1998)

Javier Tamames, Christos A. Ouzounis, Georg Casari, Chris Sander, Alfonso Valencia: EUCLID: automatic classification of proteins in functional classes by their database annotations. Bioinformatics 14(6): 542-543 (1998)

Chris Dodge, Reinhard Schneider, Chris Sander: The HSSP database of protein structure-sequence alignments and family profiles. Nucleic Acids Research 26(1): 313-315 (1998)

Liisa Holm, Chris Sander: Touring protein fold space with Dali/FSSP. Nucleic Acids Research 26(1): 316-319 (1998)

Miguel A. Andrade, Georg Casari, Chris Sander, Alfonso Valencia: Classification of protein families and detection of the determinant residues with an improved self-organizing map. Biological Cybernetics 76(6): 441-450 (1997)

Rob W. W. Hooft, Chris Sander, Gert Vriend: Objectively judging the quality of a protein structure from a Ramachandran plot. Computer Applications in the Biosciences 13(4): 425-430 (1997)

Miguel A. Andrade, Georg Casari, Antoine de Daruvar, Chris Sander, Reinhard Schneider, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis: Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function. Computer Applications in the Biosciences 13(4): 481-483 (1997)

Reinhard Schneider, Antoine de Daruvar, Chris Sander: The HSSP database of protein structure-sequence alignments. Nucleic Acids Research 25(1): 226-230 (1997)

Liisa Holm, Chris Sander: Dali/FSSP classification of three-dimensional protein folds. Nucleic Acids Research 25(1): 231-234 (1997)

Liisa Holm, Chris Sander: Decision Support System for the Evolutionary Classification of Protein Structures. ISMB 1997: 140-146

Terry Gaasterland, Peter D. Karp, Kevin Karplus, Christos A. Ouzounis, Chris Sander, Alfonso Valencia (Eds.): Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997. AAAI 1997, isbn 1-57735-022-7

Rob W. W. Hooft, Chris Sander, Michael Scharf, Gert Vriend: The PDBFINDER database: a summary of PDB, DSSP and HSSP information with added value. Computer Applications in the Biosciences 12(6): 525-529 (1996)

Reinhard Schneider, Chris Sander: The HSSP database of protein structure-sequence alignments. Nucleic Acids Research 24(1): 201-205 (1996)

Liisa Holm, Chris Sander: The FSSP database: fold classification based on structure-structure alignment of proteins. Nucleic Acids Research 24(1): 206-209 (1996)

Frank Eisenhaber, Philip Lijnzaad, Patrick Argos, Chris Sander, Michael Scharf: The Double Cubic Lattice Method: Efficient Approaches to Numerical Integration of Surface Area and Volume and to Dot Surface Contouring of Molecular Assemblies. Journal of Computational Chemistry 16(3): 273-284 (1995)

Christos A. Ouzounis, Alfonso Valencia, Javier Tamames, Peer Bork, Chris Sander: The Functional Composition of Living Machines as a Design Principle for Artificial Organisms. ECAL 1995: 843-851

Liisa Holm, Chris Sander: 3-D Lookup: Fast Protein Structure Database Searches at 90% Reliability. ISMB 1995: 179-187

Burkhard Rost, Chris Sander, Reinhard Schneider: PHD - an automatic mail server for protein secondary structure prediction. Computer Applications in the Biosciences 10(1): 53-60 (1994)

Burkhard Rost, Chris Sander, Reinhard Schneider: Evolution and Neural Networks - Protein Secondary Structure Prediction Above 71% Accuracy. HICSS (5) 1994: 385-394

Michael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander: GeneQuiz: A Workbench for Sequence Analysis. ISMB 1994: 348-353

Chris Sander, Reinhard Schneider: The HSSP data base of protein structure-sequence alignments. Nucleic Acids Research 21(13): 3105-3109 (1993)

Chris Sander: The prediction and design of protein structures. Informatik in den Biowissenschaften 1993: 21-22

Burkhard Rost, Chris Sander: Exercising Multi-Layered Networks on Protein Secondary Structure. Int. J. Neural Syst. 3(Supplement): 209-220 (1992)

Chris Sander, Reinhard Schneider, Pieter F. W. Stouten: The Human Genome and High Performance Computing in Molecular Biology. Supercomputer 1992: 32-48