Kenji Satou

Thuc Duy Le, Lin Liu, Bing Liu, Anna Tsykin, Gregory J. Goodall, Kenji Satou, Jiuyong Li: Inferring microRNA and transcription factor regulatory networks in heterogeneous data. BMC Bioinformatics 14: 92 (2013)

Thammakorn Saethang, Osamu Hirose, Ingorn Kimkong, Vu Anh Tran, Xuan Tho Dang, Thi Lan Anh Nguyen, Thi Tu Kien Le, Mamoru Kubo, Yoichi Yamada, Kenji Satou: EpicCapo: epitope prediction using combined information of amino acid pairwise contact potentials and HLA-peptide contact site information. BMC Bioinformatics 13: 313 (2012)

Vu Anh Tran, José Carlos Clemente, Duc Thuan Nguyen, Jiuyong Li, Xuan Tho Dang, Thi Tu Kien Le, Thi Lan Anh Nguyen, Thammakorn Saethang, Mamoru Kubo, Yoichi Yamada, Kenji Satou: IMPACT: A Novel Clustering Algorithm based on Attraction. JCP 7(3): 653-665 (2012)

Dang Hung Tran, Tu Bao Ho, Tho Hoan Pham, Kenji Satou: MicroRNA Expression Profiles for Classification and Analysis of Tumor Samples. IEICE Transactions 94-D(3): 416-422 (2011)

Yoichi Yamada, Ken-ichi Hirotani, Kenji Satou, Ken-ichiro Muramoto: An Identification Method of Data-Specific GO Terms from a Microarray Data Set. IEICE Transactions 92-D(5): 1093-1102 (2009)

Dang Hung Tran, Kenji Satou, Tu Bao Ho: Finding microRNA regulatory modules in human genome using rule induction. BMC Bioinformatics 9(S-12) (2008)

José Carlos Clemente, Kenji Satou, Gabriel Valiente: Phylogenetic reconstruction from non-genomic data. Bioinformatics 23(2): 110-115 (2007)

Tho Hoan Pham, Tu Bao Ho, Dang Hung Tran, Kenji Satou: Prediction of Histone Modifications in DNA sequences. BIBE 2007: 959-966

Dang Hung Tran, Tho Hoan Pham, Kenji Satou, Tu Bao Ho: Conditional Random Fields for Predicting and Analyzing Histone Occupancy, Acetylation and Methylation Areas in DNA Sequences. EvoWorkshops 2006: 221-230

Tho Hoan Pham, Kenji Satou, Tu Bao Ho: Support Vector Machines for Prediction and Analysis of Beta and Gamma-turns in Proteins. J. Bioinformatics and Computational Biology 3(2): 343-358 (2005)

Tho Hoan Pham, José Carlos Clemente, Kenji Satou, Tu Bao Ho: Computational discovery of transcriptional regulatory rules. ECCB/JBI 2005: 107

Kiyonobu Yokota, Hongzhen Li, Kenji Satou: Contractive Conformational Change of Calmodulin Caused by the Central Linker: A Molecular Dynamics Simulation Study. METMBS 2005: 225-230

Tuan Nam Tran, Kenji Satou, Tu Bao Ho: Using Inductive Logic Programming for Predicting Protein-Protein Interactions from Multiple Genomic Data. PKDD 2005: 321-330

Akihiko Konagaya, Kenji Satou (Eds.): Grid Computing in Life Science, First International Workshop on Life Science Grid, LSGRID 2004, Kanazawa, Japan, May 31 - June 1, 2004, Revised Selected andInvited Papers. Lecture Notes in Computer Science 3370, Springer 2005, isbn 3-540-25208-8

Kenji Satou, Kaoru Yamamoto: Utilizing weakly controlled vocabulary for sentence segmentation in biomedical literature. In Silico Biology 5 (2004)

Akihiko Konagaya, Fumikazu Konishi, Mariko Hatakeyama, Kenji Satou: The Superstructure toward Open Bioinformatics Grid. New Generation Comput. 22(2): 167-176 (2004)

Kenji Satou, Yasuhiko Nakashima, Shin'ichi Tsuji, Xavier Défago, Akihiko Konagaya: An Integrated System for Distributed Bioinformatics Environment on Grids. LSGRID 2004: 8-19

Shouji Tatsumoto, Kenji Satou, Akihiko Konagaya: Prediction of Protein Secondary Structure from PDB Structure Information Based on Sequence Segments Homology Searching. METMBS 2004: 250-255

Yohei Minakuchi, Kenji Satou, Akihiko Konagaya: Prediction of Protein-Protein Interaction Sites Using Support Vector Machines. METMBS 2003: 22-28

Shouji Tatsumoto, Kenji Satou, Akihiko Konagaya, Jun'ichi Kurita, Hideto Shimahara, Shin-ichi Tate: Development of Support Tool for NMR Spectrum Analysis. METMBS 2003: 159-164

T. Oyama, K. Kitano, Kenji Satou, T. Ito: Extraction of knowledge on protein-protein interaction by association rule discovery. Bioinformatics 18(5): 705-714 (2002)

Y. Tsukamoto, Kyoko Takiguchi, Kenji Satou, Emiko Furuichi, Toshihisa Takagi, Satoru Kuhara: Application of a deductive database system to search for topological and similar three-dimensional structures in protein. Computer Applications in the Biosciences 13(2): 183-190 (1997)

Kenji Satou, Toshihide Ono, Yoshihisa Yamamura, Emiko Furuichi, Satoru Kuhara, Toshihisa Takagi: Extraction of Substructures of Proteins Essential to their Biological Functions by a Data Mining Technique. ISMB 1997: 254-257

Akio Nishikawa, Kenji Satou, Emiko Furuichi, Satoru Kuhara, Kazuo Ushijima: Data Classification Component in a Deductive Database System and Its Application to Protein Structural Analysis. IEICE Transactions 78-D(11): 1377-1387 (1995)

Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Satoru Kuhara, Toshihisa Takagi: Application of a Deductive Database System PACADE toward Discovery of Clusters of Similar Structures in Proteins. HICSS (5) 1994: 160-170

Kenji Satou, Emiko Furuichi, Kyoko Takiguchi, Toshihisa Takagi, Satoru Kuhara: A deductive database system PACADE for analyzing 3-D and secondary structures of protein. Computer Applications in the Biosciences 9(3): 259-265 (1993)