Sohrab P. Shah

Jiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio, Sohrab P. Shah: Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data. Bioinformatics 28(2): 167-175 (2012)

Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Sam Aparicio, Sohrab P. Shah: JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data. Bioinformatics 28(7): 907-913 (2012)

Andrew McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin Collins, Süleyman Cenk Sahinalp: Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing. RECOMB 2012: 181-182

Andrew McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin Collins, Süleyman Cenk Sahinalp: Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data. Bioinformatics 27(11): 1481-1488 (2011)

Andrew McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, Süleyman Cenk Sahinalp, David G. Huntsman, Sohrab P. Shah: deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data. PLoS Computational Biology 7(5) (2011)

Rodrigo Goya, Mark G. F. Sun, Ryan D. Morin, Gillian Leung, Gavin Ha, Kimberley C. Wiegand, Janine Senz, Anamaria Crisan, Marco A. Marra, Martin Hirst, David G. Huntsman, Kevin P. Murphy, Sam Aparicio, Sohrab P. Shah: SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors. Bioinformatics 26(6): 730-736 (2010)

Steven J. M. Jones, Janessa Laskin, Yvonne Y. Li, Obi L. Griffith, Jianghong An, Mikhail Bilenky, Yaron S. N. Butterfield, Timothee Cezard, Eric Chuah, Richard Corbett, Anthony P. Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D. Morin, Trevor J. Pugh, Tesa Severson, Sohrab P. Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A. Moore, David G. Huntsman, Inanç Birol, Martin Hirst, Robert A. Holt, Marco A. Marra: Genomic analysis of a rare human tumor. BMC Bioinformatics 11(S-4): O3 (2010)

Jiarui Ding, Sohrab P. Shah: Robust hidden semi-Markov modeling of array CGH data. BIBM 2010: 603-608

Sohrab P. Shah, K-John Cheung Jr., Nathalie A. Johnson, Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy: Model-based clustering of array CGH data. Bioinformatics 25(12) (2009)

Sohrab P. Shah, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy: Modeling recurrent DNA copy number alterations in array CGH data. ISMB/ECCB (Supplement of Bioinformatics) 2007: 450-458

Sohrab P. Shah, Xiang Xuan, Ronald J. deLeeuw, Mehrnoush Khojasteh, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy: Integrating copy number polymorphisms into array CGH analysis using a robust HMM. ISMB (Supplement of Bioinformatics) 2006: 431-439

Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. Yuen, John Ling, B. F. Francis Ouellette: Atlas - a data warehouse for integrative bioinformatics. BMC Bioinformatics 6: 34 (2005)

Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette: Pegasys: software for executing and integrating analyses of biological sequences. BMC Bioinformatics 5: 40 (2004)

Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette: GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results. Bioinformatics 19(10): 1296-1297 (2003)