John Shalf

Hongzhang Shan, Nicholas J. Wright, John Shalf, Katherine A. Yelick, Marcus Wagner, Nathan Wichmann: A preliminary evaluation of the hardware acceleration of the Cray Gemini interconnect for PGAS languages and comparison with MPI. SIGMETRICS Performance Evaluation Review 40(2): 92-98 (2012)

Richard F. Barrett, Xiaobo Sharon Hu, Sudip S. Dosanjh, S. Parker, Michael A. Heroux, John Shalf: Toward codesign in high performance computing systems. ICCAD 2012: 443-449

Myoungsoo Jung, Ellis Herbert Wilson, David Donofrio, John Shalf, Mahmut T. Kandemir: NANDFlashSim: Intrinsic latency variation aware NAND flash memory system modeling and simulation at microarchitecture level. MSST 2012: 1-12

Jatin Chhugani, Changkyu Kim, Hemant Shukla, Jongsoo Park, Pradeep Dubey, John Shalf, Horst D. Simon: Billion-particle SIMD-friendly two-point correlation on large-scale HPC cluster systems. SC 2012: 1

Samuel Williams, Dhiraj D. Kalamkar, Amik Singh, Anand M. Deshpande, Brian van Straalen, Mikhail Smelyanskiy, Ann S. Almgren, Pradeep Dubey, John Shalf, Leonid Oliker: Optimization of geometric multigrid for emerging multi- and manycore processors. SC 2012: 96

John Shalf: The Analysis of Impact of Energy Efficiency Requirements on Programming Environments. SC Companion 2012: 920-941

John Shalf, Dan Quinlan, Curtis Janssen: Rethinking Hardware-Software Codesign for Exascale Systems. IEEE Computer 44(11): 22-30 (2011)

Jack Dongarra, Peter H. Beckman, Terry Moore, Patrick Aerts, Giovanni Aloisio, Jean-Claude Andre, David Barkai, Jean-Yves Berthou, Taisuke Boku, Bertrand Braunschweig, Franck Cappello, Barbara M. Chapman, Xuebin Chi, Alok N. Choudhary, Sudip S. Dosanjh, Thom H. Dunning, Sandro Fiore, Al Geist, Bill Gropp, Robert J. Harrison, Mark Hereld, Michael A. Heroux, Adolfy Hoisie, Koh Hotta, Zhong Jin, Yutaka Ishikawa, Fred Johnson, Sanjay Kale, Richard Kenway, David E. Keyes, Bill Kramer, Jesús Labarta, Alain Lichnewsky, Thomas Lippert, Bob Lucas, Barney Maccabe, Satoshi Matsuoka, Paul Messina, Peter Michielse, Bernd Mohr, Matthias S. Müller, Wolfgang E. Nagel, Hiroshi Nakashima, Michael E. Papka, Daniel A. Reed, Mitsuhisa Sato, Edward Seidel, John Shalf, David Skinner, Marc Snir, Thomas L. Sterling, Rick Stevens, Fred Streitz, Bob Sugar, Shinji Sumimoto, William Tang, John Taylor, Rajeev Thakur, Anne E. Trefethen, Mateo Valero, Aad van der Steen, Jeffrey S. Vetter, Peg Williams, Robert W. Wisniewski, Katherine A. Yelick: The International Exascale Software Project roadmap. IJHPCA 25(1): 3-60 (2011)

Keren Bergman, Gilbert Hendry, Paul Hargrove, John Shalf, Bruce Jacob, K. Scott Hemmert, Arun Rodrigues, David Resnick: Let there be light!: the future of memory systems is photonics and 3D stacking. MSPC 2011: 43-48

Robert Preissl, Nathan Wichmann, Bill Long, John Shalf, Stéphane Ethier, Alice E. Koniges: Multithreaded global address space communication techniques for gyrokinetic fusion applications on ultra-scale platforms. SC 2011: 15

Kamesh Madduri, Khaled Z. Ibrahim, Samuel Williams, Eun-Jin Im, Stéphane Ethier, John Shalf, Leonid Oliker: Gyrokinetic toroidal simulations on leading multi- and manycore HPC systems. SC 2011: 23

Samuel Williams, Leonid Oliker, Jonathan Carter, John Shalf: Extracting ultra-scale Lattice Boltzmann performance via hierarchical and distributed auto-tuning. SC 2011: 55

Jens Krueger, David Donofrio, John Shalf, Marghoob Mohiyuddin, Samuel Williams, Leonid Oliker, Franz-Josef Pfreund: Hardware/software co-design for energy-efficient seismic modeling. SC 2011: 73

John Shalf, David Donofrio, Chris Rowen, Leonid Oliker, Michael F. Wehner: Green Flash: Climate Machine (LBNL). Encyclopedia of Parallel Computing 2011: 809-819

Shoaib Kamil, Leonid Oliker, Ali Pinar, John Shalf: Communication Requirements and Interconnect Optimization for High-End Scientific Applications. IEEE Trans. Parallel Distrib. Syst. 21(2): 188-202 (2010)

Lavanya Ramakrishnan, Keith R. Jackson, Shane Canon, Shreyas Cholia, John Shalf: Defining future platform requirements for e-Science clouds. SoCC 2010: 101-106

Keith R. Jackson, Lavanya Ramakrishnan, Krishna Muriki, Shane Canon, Shreyas Cholia, John Shalf, Harvey J. Wasserman, Nicholas J. Wright: Performance Analysis of High Performance Computing Applications on the Amazon Web Services Cloud. CloudCom 2010: 159-168

Gilbert Hendry, Johnnie Chan, Shoaib Kamil, Leonid Oliker, John Shalf, Luca P. Carloni, Keren Bergman: Silicon Nanophotonic Network-on-Chip Using TDM Arbitration. Hot Interconnects 2010: 88-95

Shoaib Kamil, Cy Chan, Leonid Oliker, John Shalf, Samuel Williams: An auto-tuning framework for parallel multicore stencil computations. IPDPS 2010: 1-12

Andrew Uselton, Mark Howison, Nicholas J. Wright, David Skinner, Noel Keen, John Shalf, Karen L. Karavanic, Leonid Oliker: Parallel I/O performance: From events to ensembles. IPDPS 2010: 1-11

John Shalf, Sudip S. Dosanjh, John Morrison: Exascale Computing Technology Challenges. VECPAR 2010: 1-25

David Donofrio, Leonid Oliker, John Shalf, Michael F. Wehner, Chris Rowen, Jens Krueger, Shoaib Kamil, Marghoob Mohiyuddin: Energy-Efficient Computing for Extreme-Scale Science. IEEE Computer 42(11): 62-71 (2009)

Samuel Williams, Jonathan Carter, Leonid Oliker, John Shalf, Katherine A. Yelick: Optimization of a lattice Boltzmann computation on state-of-the-art multicore platforms. J. Parallel Distrib. Comput. 69(9): 762-777 (2009)

Samuel Williams, Leonid Oliker, Richard W. Vuduc, John Shalf, Katherine A. Yelick, James Demmel: Optimization of sparse matrix-vector multiplication on emerging multicore platforms. Parallel Computing 35(3): 178-194 (2009)

Julian Borrill, Leonid Oliker, John Shalf, Hongzhang Shan, Andrew Uselton: HPC global file system performance analysis using a scientific-application derived benchmark. Parallel Computing 35(6): 358-373 (2009)

Kaushik Datta, Shoaib Kamil, Samuel Williams, Leonid Oliker, John Shalf, Katherine A. Yelick: Optimization and Performance Modeling of Stencil Computations on Modern Microprocessors. SIAM Review 51(1): 129-159 (2009)

Joseph Gebis, Leonid Oliker, John Shalf, Samuel Williams, Katherine A. Yelick: Improving Memory Subsystem Performance Using ViVA: Virtual Vector Architecture. ARCS 2009: 146-158

Brian van Straalen, John Shalf, Terry J. Ligocki, Noel Keen, Woo-Sun Yang: Scalability challenges for massively parallel AMR applications. IPDPS 2009: 1-12

Gilbert Hendry, Shoaib Kamil, Aleksandr Biberman, Johnnie Chan, Benjamin G. Lee, Marghoob Mohiyuddin, Ankit Jain, Keren Bergman, Luca P. Carloni, John Kubiatowicz, Leonid Oliker, John Shalf: Analysis of photonic networks for a chip multiprocessor using scientific applications. NOCS 2009: 104-113

Kamesh Madduri, Samuel Williams, Stéphane Ethier, Leonid Oliker, John Shalf, Erich Strohmaier, Katherine A. Yelick: Memory-efficient optimization of Gyrokinetic particle-to-grid interpolation for multicore processors. SC 2009

Marghoob Mohiyuddin, Mark Murphy, Leonid Oliker, John Shalf, John Wawrzynek, Samuel Williams: A design methodology for domain-optimized power-efficient supercomputing. SC 2009

Leonid Oliker, Andrew Canning, Jonathan Carter, John Shalf, Stéphane Ethier: Scientific Application Performance On Leading Scalar and Vector Supercomputering Platforms. IJHPCA 22(1): 5-20 (2008)

Michael F. Wehner, Leonid Oliker, John Shalf: Towards Ultra-High Resolution Models of Climate and Weather. IJHPCA 22(2): 149-165 (2008)

Shoaib Kamil, John Shalf, Erich Strohmaier: Power efficiency in high performance computing. IPDPS 2008: 1-8

Samuel Williams, Jonathan Carter, Leonid Oliker, John Shalf, Katherine A. Yelick: Lattice Boltzmann simulation optimization on leading multicore platforms. IPDPS 2008: 1-14

Kaushik Datta, Mark Murphy, Vasily Volkov, Samuel Williams, Jonathan Carter, Leonid Oliker, David A. Patterson, John Shalf, Katherine A. Yelick: Stencil computation optimization and auto-tuning on state-of-the-art multicore architectures. SC 2008: 4

Hongzhang Shan, Katie Antypas, John Shalf: Characterizing and predicting the I/O performance of HPC applications using a parameterized synthetic benchmark. SC 2008: 42

Samuel Williams, John Shalf, Leonid Oliker, Shoaib Kamil, Parry Husbands, Katherine A. Yelick: Scientific Computing Kernels on the Cell Processor. International Journal of Parallel Programming 35(3): 263-298 (2007)

Shoaib Kamil, Ali Pinar, Daniel K. Gunter, Michael Lijewski, Leonid Oliker, John Shalf: Reconfigurable hybrid interconnection for static and dynamic scientific applications. Conf. Computing Frontiers 2007: 183-194

Leonid Oliker, Andrew Canning, Jonathan Carter, Costin Iancu, Michael Lijewski, Shoaib Kamil, John Shalf, Hongzhang Shan, Erich Strohmaier, Stéphane Ethier, Tom Goodale: Scientific Application Performance on Candidate PetaScale Platforms. IPDPS 2007: 1-12

Julian Borrill, Leonid Oliker, John Shalf, Hongzhang Shan: Investigation of leading HPC I/O performance using a scientific-application derived benchmark. SC 2007: 10

Samuel Williams, Leonid Oliker, Richard W. Vuduc, John Shalf, Katherine A. Yelick, James Demmel: Optimization of sparse matrix-vector multiplication on emerging multicore platforms. SC 2007: 38

Erik Schnetter, Christian Ott, Gabrielle Allen, Peter Diener, Tom Goodale, Thomas Radke, Edward Seidel, John Shalf: Cactus Framework: Black Holes to Gamma Ray Bursts. CoRR abs/0707.1607 (2007)

Shoaib Kamil, Kaushik Datta, Samuel Williams, Leonid Oliker, John Shalf, Katherine A. Yelick: Implicit and explicit optimizations for stencil computations. Memory System Performance and Correctness 2006: 51-60

Samuel Williams, John Shalf, Leonid Oliker, Shoaib Kamil, Parry Husbands, Katherine A. Yelick: The potential of the cell processor for scientific computing. Conf. Computing Frontiers 2006: 9-20

Luke J. Gosink, John Shalf, Kurt Stockinger, Kesheng Wu, Wes Bethel: HDF5-FastQuery: Accelerating Complex Queries on HDF Datasets using Fast Bitmap Indices. SSDBM 2006: 149-158

Jonathan Carter, Leonid Oliker, John Shalf: Performance Evaluation of Scientific Applications on Modern Parallel Vector Systems. VECPAR 2006: 490-503

Leonid Oliker, Andrew Canning, Jonathan Carter, John Shalf, David Skinner, Stéphane Ethier, Rupak Biswas, M. Jahed Djomehri, Rob F. Van der Wijngaart: Performance evaluation of the SX-6 vector architecture for scientific computations. Concurrency - Practice and Experience 17(1): 69-93 (2005)

Ruxandra Bondarescu, Gabrielle Allen, Greg Daues, Ian Kelley, Michael Russell, Edward Seidel, John Shalf, Malcolm Tobias: The Astrophysics Simulation Collaboratory Portal: a framework for effective distributed research. Future Generation Comp. Syst. 21(2): 259-270 (2005)

Shoaib Kamil, Parry Husbands, Leonid Oliker, John Shalf, Katherine A. Yelick: Impact of modern memory subsystems on cache optimizations for stencil computations. Memory System Performance 2005: 36-43

John Shalf, Shoaib Kamil, Leonid Oliker, David Skinner: Analyzing Ultra-Scale Application Communication Requirements for a Reconfigurable Hybrid Interconnect. SC 2005: 17

Kurt Stockinger, John Shalf, E. Wes Bethel, Kesheng Wu: DEX: Increasing the Capability of Scientific Data Analysis Pipelines by Using Efficient Bitmap Indices to Accelerate Scientific Visualization. SSDBM 2005: 35-44

Kurt Stockinger, John Shalf, Kesheng Wu, E. Wes Bethel: Query-Driven Visualization of Large Data Sets. IEEE Visualization 2005: 22

Gorden Griem, Leonid Oliker, John Shalf, Katherine A. Yelick: Identifying Performance Bottlenecks on Modern Microarchitectures Using an Adaptable Probe. IPDPS 2004

Leonid Oliker, Andrew Canning, Jonathan Carter, John Shalf, Stéphane Ethier: Scientific Computations on Modern Parallel Vector Systems. SC 2004: 10

John Shalf, E. Wes Bethel: The Grid and Future Visualization System Architectures. IEEE Computer Graphics and Applications 23(2): 6-9 (2003)

T. J. Jankun-Kelly, Oliver Kreylos, Kwan-Liu Ma, Bernd Hamann, Kenneth I. Joy, John Shalf, E. Wes Bethel: Deploying Web-Based Visual Exploration Tools on the Grid. IEEE Computer Graphics and Applications 23(2): 40-50 (2003)

E. Wes Bethel, John Shalf: Grid-Distributed Visualizations Using Connectionless Protocols. IEEE Computer Graphics and Applications 23(2): 51-59 (2003)

Gabrielle Allen, Tom Goodale, Thomas Radke, Michael Russell, Edward Seidel, Kelly Davis, Konstantinos Dolkas, Nikolaos D. Doulamis, Thilo Kielmann, André Merzky, Jarek Nabrzyski, Juliusz Pukacki, John Shalf, Ian J. Taylor: Enabling Applications on the Grid: A Gridlab Overview. IJHPCA 17(4): 449-466 (2003)

Gunther H. Weber, Martin Öhler, Oliver Kreylos, John Shalf, E. Wes Bethel, Bernd Hamann, Gerik Scheuermann: Parallel Cell Projection Rendering of Adaptive Mesh Refinement Data. IEEE Symposium on Parallel and Large-Data Visualization and Graphics 2003: 51-60

Leonid Oliker, Andrew Canning, Jonathan Carter, John Shalf, David Skinner, Stéphane Ethier, Rupak Biswas, M. Jahed Djomehri, Rob F. Van der Wijngaart: Evaluation of Cache-based Superscalar and Cacheless Vector Architectures for Scientific Computations. SC 2003: 38

E. Wes Bethel, Greg Abram, John Shalf, Randy Frank, James P. Ahrens, Steve Parker, Nagiza F. Samatova, Mark Miller: Interoperability of Visualization Software and Data Models is NOT an Achievable Goal. IEEE Visualization 2003: 607-610

Michael Russell, Gabrielle Allen, Greg Daues, Ian T. Foster, Edward Seidel, Jason Novotny, John Shalf, Gregor von Laszewski: The Astrophysics Simulation Collaboratory: A Science Portal Enabling Community Software Development. Cluster Computing 5(3): 297-304 (2002)

Gregor von Laszewski, Michael Russell, Ian T. Foster, John Shalf, Gabrielle Allen, Greg Daues, Jason Novotny, Edward Seidel: Community software development with the Astrophysics Simulation Collaboratory. Concurrency and Computation: Practice and Experience 14(13-15): 1289-1301 (2002)

Gabrielle Allen, Dave Angulo, Tom Goodale, Thilo Kielmann, André Merzky, Jarek Nabrzyski, Juliusz Pukacki, Michael Russell, Thomas Radke, Edward Seidel, John Shalf, Ian J. Taylor: GridLab: Enabling Applications on the Grid. GRID 2002: 39-45

Tom Goodale, Gabrielle Allen, Gerd Lanfermann, Joan Massó, Thomas Radke, Edward Seidel, John Shalf: The Cactus Framework and Toolkit: Design and Applications. VECPAR 2002: 197-227

Gabrielle Allen, Werner Benger, Thomas Dramlitsch, Tom Goodale, Hans-Christian Hege, Gerd Lanfermann, André Merzky, Thomas Radke, Edward Seidel, John Shalf: Cactus Tools for Grid Applications. Cluster Computing 4(3): 179-188 (2001)

Gabrielle Allen, David Angulo, Ian T. Foster, Gerd Lanfermann, Chuang Liu, Thomas Radke, Edward Seidel, John Shalf: The Cactus Worm: Experiments with Dynamic Resource Discovery and Allocation in a Grid Environment. IJHPCA 15(4): 345-358 (2001)

Michael Russell, Gabrielle Allen, Greg Daues, Ian T. Foster, Edward Seidel, Jason Novotny, John Shalf, Gregor von Laszewski: The Astrophysics Simulation Collaboratory Portal: A Science Portal Enabling Community Software Development. HPDC 2001: 207-215

Gunther H. Weber, Oliver Kreylos, Terry J. Ligocki, John Shalf, Hans Hagen, Bernd Hamann, Kenneth I. Joy, Kwan-Liu Ma: High-quality Volume Rendering of Adaptive Mesh Refinement Data. VMV 2001: 121-128

Gabrielle Allen, Dave Angulo, Ian T. Foster, Gerd Lanfermann, Chuang Liu, Thomas Radke, Edward Seidel, John Shalf: The Cactus Worm: Experiments with Dynamic Resource Discovery and Allocation in a Grid Environment. CoRR cs.DC/0108001 (2001)

Gabrielle Allen, Werner Benger, Tom Goodale, Hans-Christian Hege, Gerd Lanfermann, André Merzky, Thomas Radke, Edward Seidel, John Shalf: The Cactus Code: A Problem Solving Environment for the Grid. HPDC 2000: 253-

Gabrielle Allen, Tom Goodale, Gerd Lanfermann, Thomas Radke, Edward Seidel, Werner Benger, Hans-Christian Hege, André Merzky, Joan Massó, John Shalf: Solving Einstein's Equations on Supercomputers. IEEE Computer 32(12): 52-58 (1999)

Werner Benger, Ian T. Foster, Jason Novotny, Edward Seidel, John Shalf, Warren Smith, Paul Walker: Numerical Relativity in a Distributed Environment. PPSC 1999