Tetsuo Shibuya

Ritsuko Onuki, Ryo Yamada, Rui Yamaguchi, Minoru Kanehisa, Tetsuo Shibuya: Population Model-Based Inter-Diplotype Similarity Measure for Accurate Diplotype Clustering. Journal of Computational Biology 19(1): 55-67 (2012)

Genki Terashi, Tetsuo Shibuya, Mayuko Takeda-Shitaka: LB3D: A Protein Three-Dimensional Substructure Search Program Based on the Lower Bound of a Root Mean Square Deviation Value. Journal of Computational Biology 19(5): 493-503 (2012)

Mohammed Sahli, Tetsuo Shibuya: Max-Shift BM and Max-Shift Horspool: Practical Fast Exact String Matching Algorithms. JIP 20(2): 419-425 (2012)

Alexander Bowe, Taku Onodera, Kunihiko Sadakane, Tetsuo Shibuya: Succinct de Bruijn Graphs. WABI 2012: 225-235

Tetsuo Shibuya, Hisashi Kashima, Jun Sese, Shandar Ahmad (Eds.): Pattern Recognition in Bioinformatics - 7th IAPR International Conference, PRIB 2012, Tokyo, Japan, November 8-10, 2012. Proceedings. Lecture Notes in Computer Science 7632, Springer 2012, isbn 978-3-642-34122-9

Taku Onodera, Tetsuo Shibuya: An Index Structure for Spaced Seed Search. ISAAC 2011: 764-772

Daisuke Kimura, Tetsuji Kuboyama, Tetsuo Shibuya, Hisashi Kashima: A Subpath Kernel for Rooted Unordered Trees. PAKDD (1) 2011: 62-74

Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane: Linear-time protein 3-D structure searching with insertions and deletions. Algorithms for Molecular Biology 5: 7 (2010)

Tetsuo Shibuya: Geometric suffix tree: Indexing protein 3-D structures. J. ACM 57(3) (2010)

Tetsuo Shibuya: Searching Protein 3-D Structures in Linear Time. Journal of Computational Biology 17(3): 203-219 (2010)

Tetsuo Shibuya: Searching Protein Three-Dimensional Structures in Faster Than Linear Time. Journal of Computational Biology 17(4): 593-602 (2010)

Tetsuo Shibuya: Fast Hinge Detection Algorithms for Flexible Protein Structures. IEEE/ACM Trans. Comput. Biology Bioinform. 7(2): 333-341 (2010)

Ben Hachimori, Tetsuo Shibuya: Lazy Suffix Array: The Data Structure for Online Construction and Pattern Searching. IEICE Transactions 92-A(8): 1750-1756 (2009)

Tetsuo Shibuya: Searching Protein 3-D Structures in Linear Time. RECOMB 2009: 1-15

Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane: Linear-Time Protein 3-D Structure Searching with Insertions and Deletions. WABI 2009: 310-320

Tetsuo Shibuya: Efficient Substructure RMSD Query Algorithms. Journal of Computational Biology 14(9): 1201-1207 (2007)

Tetsuo Shibuya: Prefix-Shuffled Geometric Suffix Tree. SPIRE 2007: 300-309

Tetsuo Shibuya: Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures. CPM 2006: 84-93

Tetsuo Shibuya: Generalization of a Suffix Tree for RNA Structural Pattern Matching. Algorithmica 39(1): 1-19 (2004)

Tetsuo Shibuya, Hisashi Kashima, Akihiko Konagaya: Efficient filtering methods for clustering cDNAs with spliced sequence alignment. Bioinformatics 20(1): 29-39 (2004)

Tien Huynh, Isidore Rigoutsos, Laxmi Parida, Daniel E. Platt, Tetsuo Shibuya: The web server of IBM's Bioinformatics and Pattern Discovery group. Nucleic Acids Research 31(13): 3645-3650 (2003)

Tetsuo Shibuya, Igor Kurochkin: Match Chaining Algorithms for cDNA Mapping. WABI 2003: 462-475

Hiroshi Kawazoe, Tetsuo Shibuya, Takeshi Tokuyama: Optimal Online Algorithms for an Electronic Commerce Money Distribution System. Algorithmica 33(3): 287-299 (2002)

Tetsuo Shibuya: Computing the nxm Shortest Paths Efficiently. ACM Journal of Experimental Algorithmics 5: 9 (2000)

Tetsuo Shibuya: Generalization of a Suffix Tree for RNA Structural Pattern Matching. SWAT 2000: 393-406

Tetsuo Shibuya: Computing the n × m Shortest Paths Efficently. ALENEX 1999: 210-225

Tetsuo Shibuya: Constructing the Suffix Tree of a Tree with a Large Alphabet. ISAAC 1999: 225-236

Hiroshi Kawazoe, Tetsuo Shibuya, Takeshi Tokuyama: Optimal On-line Algorithms for an Electronic Commerce Money Distribution System. SODA 1999: 527-536

Tetsuo Shibuya, Hiroshi Imai: New Flexible Approaches for Multiple Sequence Alignment. Journal of Computational Biology 4(3): 385-413 (1997)

Tetsuo Shibuya, Hiroshi Imai: New flexible approaches for multiple sequence alignment. RECOMB 1997: 267-276

Tetsuo Shibuya, Hiroshi Imai, Shigeki Nishimura, Hiroshi Shimoura, Kenji Tenmoku: Detour Queries in Geographical Databases for Navigation and Related Algorithm Animations. CODAS 1996: 246-

Tsuyoshi Ono, Yoshiaki Kyoda, Tomonari Masada, Kazuyoshi Hayase, Tetsuo Shibuya, Motoki Nakade, Mary Inaba, Hiroshi Imai, Keiko Imai, David Avis: A Package for Triangulations. Symposium on Computational Geometry 1996: V-17-V-18