Ie-Ming Shih

Chen Wang, Jianhua Xuan, Ie-Ming Shih, Robert Clarke, Yue Joseph Wang: Regulatory component analysis: A semi-blind extraction approach to infer gene regulatory networks with imperfect biological knowledge. Signal Processing 92(8): 1902-1915 (2012)

Jinghua Gu, Jianhua Xuan, Chen Wang, Li Chen, Tian-Li Wang, Ie-Ming Shih: Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm. CIBCB 2012: 267-274

Xuchu Hou, Guoqiang Yu, Xiguo Yuan, Bai Zhang, Ie-Ming Shih, Zhen Zhang, Robert Clarke, Subha Madhavan: Accurate identification of significant aberrations in contaminated cancer genome. GENSiPS 2012: 74-77

Guoqiang Yu, Huai Li, Sook S. Ha, Ie-Ming Shih, Robert Clarke, Eric P. Hoffman, Subha Madhavan, Jianhua Xuan, Yue Joseph Wang: PUGSVM: a caBIG^TM analytical tool for multiclass gene selection and predictive classification. Bioinformatics 27(5): 736-738 (2011)

Bai Zhang, Ye Tian, Lu Jin, Huai Li, Ie-Ming Shih, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Leena Hilakivi-Clarke, Yue Joseph Wang: DDN: a caBIG^® analytical tool for differential network analysis. Bioinformatics 27(7): 1036-1038 (2011)

Guoqiang Yu, Bai Zhang, G. Steven Bova, Jianfeng Xu, Ie-Ming Shih, Yue Joseph Wang: BACOM: in silico detection of genomic deletion types and correction of normal cell contamination in copy number data. Bioinformatics 27(11): 1473-1480 (2011)

Ye Tian, Bai Zhang, Ie-Ming Shih, Yue Joseph Wang: Knowledge-guided differential dependency network learning for detecting structural changes in biological networks. BCB 2011: 254-263

Yuanjian Feng, Guoqiang Yu, Tian-Li Wang, Ie-Ming Shih, Yue Joseph Wang: Analysing DNA copy number changes using Fused Margin Regression. I. J. Functional Informatics and Personalised Medicine 3(1): 3-15 (2010)

Guoqiang Yu, Yuanjian Feng, David J. Miller, Jianhua Xuan, Eric P. Hoffman, Robert Clarke, Ben Davidson, Ie-Ming Shih, Yue Joseph Wang: Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases. Journal of Machine Learning Research 11: 2141-2167 (2010)

Li Chen, Jianhua Xuan, Chen Wang, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke, Eric P. Hoffman: Biomarker identification by knowledge-driven multilevel ICA and motif analysis. IJDMB 3(4): 365-381 (2009)

Guoqiang Yu, Bai Zhang, Jianfeng Xu, Ie-Ming Shih, Yue Joseph Wang: Accurate Estimation of Genomic Deletions and Normal Cell Contamination by Bayesian Analysis of Mixtures. BIBM 2009: 332-337

Yuanjian Feng, Guoqiang Yu, Tian-Li Wang, Ie-Ming Shih, Yue Joseph Wang: Analyzing DNA Copy Number Changes Using Fused Margin Regression. BIBM 2009: 388-391

Li Chen, Jianhua Xuan, Chen Wang, Ie-Ming Shih, Yue Joseph Wang, Zhen Zhang, Eric P. Hoffman, Robert Clarke: Knowledge-guided multi-scale independent component analysis for biomarker identification. BMC Bioinformatics 9 (2008)

Li Chen, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Yue Joseph Wang, Robert Clarke, Eric P. Hoffman, Jianhua Xuan: Biomarker Identification by Knowledge-Driven Multi-Level ICA and Motif Analysis. ICMLA 2007: 560-566