Toshio Shimizu

Masafumi Arai, Takafumi Fukushi, Masanobu Satake, Toshio Shimizu: A proteome-wide analysis of domain architectures of prokaryotic single-spanning transmembrane proteins. Computational Biology and Chemistry 29(5): 379-387 (2005)

Yasuhito Inoue, Masami Ikeda, Toshio Shimizu: Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern. Computational Biology and Chemistry 28(1): 39-49 (2004)

Jun-Xiong Xia, Masami Ikeda, Toshio Shimizu: ConPred_elite: a highly reliable approach to transmembrane topology prediction. Computational Biology and Chemistry 28(1): 51-60 (2004)

Masafumi Arai, Hironori Mitsuke, Masami Ikeda, Jun-Xiong Xia, Takashi Kikuchi, Masanobu Satake, Toshio Shimizu: ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability. Nucleic Acids Research 32(Web-Server-Issue): 390-393 (2004)

Masami Ikeda, Masafumi Arai, Toshikatsu Okuno, Toshio Shimizu: TMPDB: a database of experimentally-characterized transmembrane topologies. Nucleic Acids Research 31(1): 406-409 (2003)

Demelo Madrazo Lao, Masafumi Arai, Masami Ikeda, Toshio Shimizu: The presence of signal peptide significantly affects transmembrane topology prediction. Bioinformatics 18(12): 1562-1566 (2002)

Demelo Madrazo Lao, Toshikatsu Okuno, Toshio Shimizu: Evaluating transmembrane topology prediction methods for the effect of signal peptide in topology prediction. In Silico Biology 2: 43 (2002)

Masami Ikeda, Masafumi Arai, Demelo Madrazo Lao, Toshio Shimizu: Transmembrane topology prediction methods: A re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topology . In Silico Biology 2: 3 (2001)

Masami Ikeda, Masafumi Arai, Demelo Madrazo Lao, Toshio Shimizu: Transmembrane topology prediction methods: A re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topology . In Silico Biology 2: 3 (2001)

Nobuaki Kikuchi, Zhongmin Li, Demelo Madrazo Lao, Natalia V. Polulyakh, Yoshio Yoshioka, Toshio Shimizu: Parallel Computing Technique of Pairwise Alignment by a Dataflow Loop-Structured-Computer. PDPTA 2000