Mona Singh

Sanjay Ranka, Tamer Kahveci, Mona Singh (Eds.): ACM International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 12, Orlando, FL, USA - October 08 - 10, 2012. ACM 2012, isbn 978-1-4503-1670-5

Alejandro Ochoa, Manuel Llinás, Mona Singh: Using context to improve protein domain identification. BMC Bioinformatics 12: 90 (2011)

Carl Kingsford, Elena Zaslavsky, Mona Singh: A cost-aggregating integer linear program for motif finding. J. Discrete Algorithms 9(4): 326-334 (2011)

Teresa M. Przytycka, Mona Singh, Donna K. Slonim: Toward the dynamic interactome: it's about time. Briefings in Bioinformatics 11(1): 15-29 (2010)

Peng Jiang, Mona Singh: SPICi: a fast clustering algorithm for large biological networks. Bioinformatics 26(8): 1105-1111 (2010)

John A. Capra, Katrin Paeschke, Mona Singh, Virginia A. Zakian: G-Quadruplex DNA Sequences Are Evolutionarily Conserved and Associated with Distinct Genomic Features in Saccharomyces cerevisiae. PLoS Computational Biology 6(7) (2010)

Mona Singh: Predicting and Analyzing Cellular Networks. ISBRA 2010: 166

Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh, Donna K. Slonim: Session Introduction. Pacific Symposium on Biocomputing 2010: 120-122

Vincent Moulton, Mona Singh (Eds.): Algorithms in Bioinformatics, 10th International Workshop, WABI 2010, Liverpool, UK, September 6-8, 2010. Proceedings. Lecture Notes in Computer Science 6293, Springer 2010, isbn 978-3-642-15293-1

Anton V. Persikov, Robert Osada, Mona Singh: Predicting DNA recognition by Cys₂His₂ zinc finger proteins. Bioinformatics 25(1): 22-29 (2009)

Chen Yanover, Mona Singh, Elena Zaslavsky: M are better than one: an ensemble-based motif finder and its application to regulatory element prediction. Bioinformatics 25(7): 868-874 (2009)

Zia Khan, Joshua S. Bloom, Leonid Kruglyak, Mona Singh: A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays. Bioinformatics 25(13): 1609-1616 (2009)

Jimin Song, Mona Singh: How and when should interactome-derived clusters be used to predict functional modules and protein function? Bioinformatics 25(23): 3143-3150 (2009)

John A. Capra, Roman A. Laskowski, Janet M. Thornton, Mona Singh, Thomas A. Funkhouser: Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure. PLoS Computational Biology 5(12) (2009)

Eric Banks, Elena Nabieva, Bernard Chazelle, Ryan Peterson, Mona Singh: Analyzing and Interrogating Biological Networks (Abstract). BICoB 2009: 14-15

Tanya Y. Berger-Wolf, Teresa M. Przytycka, Mona Singh: Session Introduction. Pacific Symposium on Biocomputing 2009: 174-177

John A. Capra, Mona Singh: Characterization and prediction of residues determining protein functional specificity. Bioinformatics 24(13): 1473-1480 (2008)

Eric Banks, Elena Nabieva, Bernard Chazelle, Mona Singh: Organization of Physical Interactomes as Uncovered by Network Schemas. PLoS Computational Biology 4(10) (2008)

Mona Singh: U-SCRUM: An Agile Methodology for Promoting Usability. AGILE 2008: 555-560

John A. Capra, Mona Singh: Predicting functionally important residues from sequence conservation. Bioinformatics 23(15): 1875-1882 (2007)

Elena Zaslavsky, Mona Singh: A combinatorial optimization approach for diverse motif finding applications. Algorithms for Molecular Biology 1 (2006)

Carl Kingsford, Elena Zaslavsky, Mona Singh: A Compact Mathematical Programming Formulation for DNA Motif Finding. CPM 2006: 233-245

Carleton L. Kingsford, Bernard Chazelle, Mona Singh: Solving and analyzing side-chain positioning problems using linear and integer programming. Bioinformatics 21(7): 1028-1039 (2005)

Elena Nabieva, Kam Jim, Amit Agarwal, Bernard Chazelle, Mona Singh: Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. ISMB (Supplement of Bioinformatics) 2005: 302-310

Dawn J. Brooks, Jacques R. Fresco, Mona Singh: A novel method for estimating ancestral amino acid composition and its application to proteins of the Last Universal Ancestor. Bioinformatics 20(14): 2251-2257 (2004)

Robert Osada, Elena Zaslavsky, Mona Singh: Comparative analysis of methods for representing and searching for transcription factor binding sites. Bioinformatics 20(18): 3516-3525 (2004)

Bernard Chazelle, Carl Kingsford, Mona Singh: A Semidefinite Programming Approach to Side Chain Positioning with New Rounding Strategies. INFORMS Journal on Computing 16(4): 380-392 (2004)

Bernard Chazelle, Carl Kingsford, Mona Singh: The Side-Chain Positioning Problem: A Semidefinite Programming Formulation With New Rounding Schemes. PCK50 2003: 86-94

Mona Singh, Peter S. Kim: Towards predicting coiled-coil protein interactions. RECOMB 2001: 279-286

Munindar P. Singh, Mona Singh: Deconstructing the ``any'' Key. Commun. ACM 43(4): 107-108 (2000)

Baruch Awerbuch, Margrit Betke, Ronald L. Rivest, Mona Singh: Piecemeal Graph Exploration by a Mobile Robot. Inf. Comput. 152(2): 155-172 (1999)

Mona Singh, Anuj K. Jain, Munindar P. Singh: E-commerce over communicators: challenges and solutions for user interfaces. ACM Conference on Electronic Commerce 1999: 177-186

Bonnie Berger, Mona Singh: An Iterative Method for Improved Protein Structural Motif Recognition. Journal of Computational Biology 4(3): 261-273 (1997)

Mona Singh, James Barnett, Munindar P. Singh: Automating Spoken Dialogue Systems. ISMIS 1997: 207-216

Bonnie Berger, Mona Singh: An iterative method for improved protein structural motif recognition. RECOMB 1997: 37-46

James Barnett, Mona Singh: Designing a Portable Spoken Dialogue System. ECAI Workshop on Dialogue Processing in Spoken Language Systems 1996: 156-170

Margrit Betke, Ronald L. Rivest, Mona Singh: Piecemeal Learning of an Unknown Environment. Machine Learning 18(2-3): 231-254 (1995)

Baruch Awerbuch, Margrit Betke, Ronald L. Rivest, Mona Singh: Piecemeal Graph Exploration by a Mobile Robot (Extended Abstract). COLT 1995: 321-328

Margrit Betke, Ronald L. Rivest, Mona Singh: Piecemeal Learning of an Unknown Environment. COLT 1993: 277-286

Mona Singh, Munindar P. Singh: Computing the Temporal Structure of Events in Natural Language. ECAI 1992: 528-532

Avrim Blum, Mona Singh: Learning Functions of k Terms. COLT 1990: 144-153