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Barry Smith
Author information
- University of Buffalo
Other persons with the same name
- Barry Smith 0002 (Barry F. Smith) — Argonne National Laboratory, Argonne, IL, USA / University of Chicago
2010 – today
- 2012
[j37]Mark A. Musen, Natalya Fridman Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne D. Storey, Barry Smith: The National Center for Biomedical Ontology. JAMIA 19(2): 190-195 (2012)- [c44]Albert Goldfain, Lindsay G. Cowell, Barry Smith: Constructing a Lattice of Infectious Disease Ontologies from a Staphylococcus aureus Isolate Repository. ICBO 2012
- [c43]Janna Hastings, Nicolas Le Novère, Werner Ceusters, Kevin Mulligan, Barry Smith: Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies. ICBO 2012
- [c42]Ramona Walls, Barry Smith, Justin Elser, Albert Goldfain, Dennis W. Stevenson, Pankaj Jaiswal: A plant disease extension of the Infectious Disease Ontology. ICBO 2012
- 2011
- [j36]Fabian Neuhaus, Elizabeth Florescu, Antony Galton, Michael Grüninger, Nicola Guarino, Leo Obrst, Arturo Sanchez, Amanda Vizedom, Peter Yim, Barry Smith: Creating the ontologists of the future. Applied Ontology 6(1): 91-98 (2011)
- [j35]Stefano Borgo, Riichiro Mizoguchi, Barry Smith: On the ontology of functions. Applied Ontology 6(2): 99-104 (2011)
- [j34]Carol J. Bult, Harold J. Drabkin, Alexei V. Evsikov, Darren A. Natale, Cecilia N. Arighi, Natalia V. Roberts, Alan Ruttenberg, Peter D'Eustachio, Barry Smith, Judith A. Blake, Cathy H. Wu: The Representation of Protein Complexes in the Protein Ontology (PRO). BMC Bioinformatics 12: 371 (2011)
- [j33]Barry Smith, Richard H. Scheuermann: Ontologies for clinical and translational research: Introduction. Journal of Biomedical Informatics 44(1): 3-7 (2011)
- [j32]Albert Goldfain, Barry Smith, Lindsay G. Cowell: Towards an ontological representation of resistance: The case of MRSA. Journal of Biomedical Informatics 44(1): 35-41 (2011)
- [j31]Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Carol J. Bult, Michael Caudy, Harold J. Drabkin, Peter D'Eustachio, Alexei V. Evsikov, Hongzhan Huang, Jules Nchoutmboube, Natalia V. Roberts, Barry Smith, Jian Zhang, Cathy H. Wu: The Protein Ontology: a structured representation of protein forms and complexes. Nucleic Acids Research 39(Database-Issue): 539-545 (2011)
- [j30]Pierre Grenon, Barry Smith: Foundations of an ontology of philosophy. Synthese 182(2): 185-204 (2011)
- [c41]Janna Hastings, Werner Ceusters, Barry Smith, Kevin Mulligan: The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences. CONTEXT 2011: 119-123
- [c40]Jiye Ai, Mauricio Barcellos Almeida, André Queiroz de Andrade, Alan Ruttenberg, David Tai Wai Wong, Barry Smith: Towards a Body Fluids Ontology: A Unified Application Ontology for Basic and Translational Science. ICBO 2011
- [c39]Mauricio Barcellos Almeida, Anna Barbara de Freitas Carneiro Proietti, Jiye Ai, Barry Smith: The Blood Ontology: An Ontology in the Domain of Hematology. ICBO 2011
- [c38]Cecilia N. Arighi, Darren A. Natale, Judith A. Blake, Carol J. Bult, Michael Caudy, Alexander D. Diehl, Harold J. Drabkin, Peter D'Eustachio, Alexei V. Evsikov, Hongzhan Huang, Natalia V. Roberts, Alan Ruttenberg, Barry Smith, Jian Zhang, Cathy H. Wu: Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools. ICBO 2011
- [c37]Janna Hastings, Werner Ceusters, Barry Smith, Kevin Mulligan: Dispositions and Processes in the Emotion Ontology. ICBO 2011
- [c36]
- [c35]Patricia L. Whetzel, Natasha F. Noy, Nigam Shah, Paul R. Alexander, Michael Dorf, Ray W. Fergerson, Margaret-Anne D. Storey, Barry Smith, Christopher G. Chute, Mark A. Musen: Bioportal: Ontologies and Integrated Data Resources at the Click of a Mouse. ICBO 2011
- [r1]Barry Smith: PETSc (Portable, Extensible Toolkit for Scientific Computation). Encyclopedia of Parallel Computing 2011: 1530-1539
- 2010
- [j29]Barry Smith, Werner Ceusters: Ontological realism: A methodology for coordinated evolution of scientific ontologies. Applied Ontology 5(3-4): 139-188 (2010)
- [j28]Werner Ceusters, Barry Smith: Foundations for a realist ontology of mental disease. J. Biomedical Semantics 1: 10 (2010)
- [j27]Jiye Ai, Barry Smith, Wong T. David: Saliva Ontology: An ontology-based framework for a Salivaomics Knowledge Base. BMC Bioinformatics 11: 302 (2010)
- [c34]Albert Goldfain, Barry Smith, Lindsay G. Cowell: Dispositions and the Infectious Disease Ontology. FOIS 2010: 400-413
2000 – 2009
- 2009
- [j26]Cecilia N. Arighi, Hongfang Liu, Darren A. Natale, Winona C. Barker, Harold J. Drabkin, Judith A. Blake, Barry Smith, Cathy H. Wu: TGF-beta signaling proteins and the Protein Ontology. BMC Bioinformatics 10(S-5) (2009)
- [j25]Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Lieberman, Chris Mungall, Richard H. Scheuermann, Barry Smith, Lindsay G. Cowell: An improved ontological representation of dendritic cells as a paradigm for all cell types. BMC Bioinformatics 10 (2009)
- [j24]Daniel Schober, Barry Smith, Suzanna E. Lewis, Waclaw Kusnierczyk, Jane Lomax, Chris Mungall, Chris F. Taylor, Philippe Rocca-Serra, Susanna-Assunta Sansone: Survey-based naming conventions for use in OBO Foundry ontology development. BMC Bioinformatics 10 (2009)
- [j23]Thomas Bittner, Maureen Donnelly, Barry Smith: A spatio-temporal ontology for geographic information integration. International Journal of Geographical Information Science 23(6): 765-798 (2009)
- [c33]Werner Ceusters, Maria Capolupo, Barry Smith, Georges De Moor: An Evolutionary Approach to the Representation of Adverse Events. MIE 2009: 537-541
- [c32]Bernd Blobel, Dipak Kalra, Marc Koehn, Ken Lunn, Peter Pharow, Pekka Ruotsalainen, Stefan Schulz, Barry Smith: The Role of Ontologies for Sustainable, Semantically Interoperable and Trustworthy EHR Solutions. MIE 2009: 953-957
- 2008
- [j22]David P. Hill, Barry Smith, Monica S. McAndrews-Hill, Judith A. Blake: Gene Ontology annotations: what they mean and where they come from. BMC Bioinformatics 9(S-5) (2008)
- [j21]Holger Stenzhorn, Stefan Schulz, Martin Boeker, Barry Smith: Adapting Clinical Ontologies in Real-World Environments. J. UCS 14(22): 3767-3780 (2008)
- [c31]
- [c30]Mathias Brochhausen, Gabriele Weiler, Luis Martín, Cristian Cocos, Holger Stenzhorn, Norbert M. Graf, Martin Doerr, Manolis Tsiknakis, Barry Smith: Applications of the ACGT Master Ontology on Cancer. OTM Workshops 2008: 1046-1055
- 2007
- [j20]Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun: Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies. Artificial Intelligence in Medicine 39(3): 183-195 (2007)
- [j19]Darren A. Natale, Cecilia N. Arighi, Winona C. Barker, Judith A. Blake, Ti-Cheng Chang, Zhang-Zhi Hu, Hongfang Liu, Barry Smith, Cathy H. Wu: Framework for a Protein Ontology. BMC Bioinformatics 8(S-9) (2007)
- [j18]Werner Ceusters, Peter L. Elkin, Barry Smith: Negative findings in electronic health records and biomedical ontologies: A realist approach. I. J. Medical Informatics 76(S3): S326-S333 (2007)
- [j17]Werner Ceusters, Barry Smith: Referent tracking for Digital Rights Management. IJMSO 2(1): 45-53 (2007)
- [c29]
- 2006
- [j16]Leo Obrst, Patrick Cassidy, Steve Ray, Barry Smith, Dagobert Soergel, Matthew West, Peter Yim: The 2006 Upper Ontology Summit Joint Communiqué. Applied Ontology 1(2): 203-211 (2006)
- [j15]Jacob Köhler, Katherine Munn, Alexander Rüegg, Andre Skusa, Barry Smith: Quality control for terms and definitions in ontologies and taxonomies. BMC Bioinformatics 7: 212 (2006)
- [j14]Anand Kumar, Yum Lina Yip, Barry Smith, Pierre Grenon: Bridging the gap between medical and bioinformatics: An ontological case study in colon carcinoma. Comp. in Bio. and Med. 36(7-8): 694-711 (2006)
- [j13]Jonathan Simon, Mariana Casella dos Santos, James Matthew Fielding, Barry Smith: Formal ontology for natural language processing and the integration of biomedical databases. I. J. Medical Informatics 75(3-4): 224-231 (2006)
- [j12]James J. Cimino, Barry Smith: Introduction: International Medical Informatics Association Working Group 6 and the 2005 Rome Conference. Journal of Biomedical Informatics 39(3): 249-251 (2006)
- [j11]Barry Smith: From concepts to clinical reality: An essay on the benchmarking of biomedical terminologies. Journal of Biomedical Informatics 39(3): 288-298 (2006)
- [j10]Christiane Fellbaum, Udo Hahn, Barry Smith: Towards new information resources for public health - From WordNet to MedicalWordNet. Journal of Biomedical Informatics 39(3): 321-332 (2006)
- [j9]Werner Ceusters, Barry Smith: Strategies for referent tracking in electronic health records. Journal of Biomedical Informatics 39(3): 362-378 (2006)
- [j8]Werner Ceusters, Barry Smith: Referent tracking for treatment optimisation in schizophrenic patients: A case study in applying philosophical ontology to diagnostic algorithms. J. Web Sem. 4(3): 229-236 (2006)
- [c28]
- [c27]Barry Smith, Waclaw Kusnierczyk, Daniel Schober, Werner Ceusters: Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain. KR-MED 2006
- [c26]
- [c25]Werner Ceusters, Peter L. Elkin, Barry Smith: Referent Tracking: The Problem of Negative Findings. MIE 2006: 741-746
- 2005
- [c24]
- [c23]Barry Smith, José L. V. Mejino Jr., Stefan Schulz, Anand Kumar, Cornelius Rosse: Anatomical Information Science. COSIT 2005: 149-164
- 2004
- [j7]Thomas Bittner, Maureen Donnelly, Barry Smith: Endurants and perdurants in directly depicting ontologies. AI Commun. 17(4): 247-258 (2004)
- [j6]Jean-Luc Verschelde, Mariana Casella dos Santos, Tom Deray, Barry Smith, Werner Ceusters: Ontology-assisted database integration to support natural language processing and biomedical data-mining. J. Integrative Bioinformatics 1(1) (2004)
- [c22]
- [c21]Barry Smith, Christiane Fellbaum: Medical WordNet: A New Methodology for the Construction and Validation of Information Resources for Consumer Health. COLING 2004
- [c20]Barry Smith, Jacob Köhler, Anand Kumar: On the Application of Formal Principles to Life Science Data: a Case Study in the Gene Ontology. DILS 2004: 79-94
- [c19]Werner Ceusters, Barry Smith, James Matthew Fielding: LinkSuite™: Formally Robust Ontology-Based Data and Information Integration. DILS 2004: 124-139
- [c18]James Matthew Fielding, Jonathan Simon, Werner Ceusters, Barry Smith: Ontological Theory for Ontological Engineering: Biomedical Systems Information Integration. KR 2004: 114-120
- [c17]Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun: Investigating subsumption in DL-based terminologies: A Case Study in SNOMED CT . KR-MED 2004: 12-20
- [c16]Jonathan Simon, James Matthew Fielding, Barry Smith: Using Philosophy to Improve the Coherence and Interoperability of Applications Ontologies: A Field Report on the Collaboration of IFOMIS and L&C. WSPI 2004
- 2003
- [c15]Anand Kumar, Barry Smith: Ontology for Task-Based Clinical Guidelines and the Theory of Granular Partitions. AIME 2003: 71-75
- [c14]Barry Smith, Igor Papakin, Katherine Munn: Bodily Systems and the Modular Structure of the Human Body. AIME 2003: 86-90
- [c13]Maureen Donnelly, Barry Smith: Layers: A New Approach to Locating Objects in Space. COSIT 2003: 46-60
- [c12]Anand Kumar, Barry Smith: The Universal Medical Language System and the Gene Ontology: Some Critical Reflections. KI 2003: 135-148
- [e1]Pierre Grenon, Christopher Menzel, Barry Smith (Eds.): Proceedings of the KI2003 Workshop on Reference Ontologies and Application Ontologies, Hamburg, Germany, September 16, 2003. CEUR Workshop Proceedings 94, CEUR-WS.org 2003
- 2002
- [j5]Barry Smith, Berit Brogaard: Quantum Mereotopology. Ann. Math. Artif. Intell. 36(1-2): 153-175 (2002)
- [j4]Barry Smith, Achille C. Varzi: Surrounding space the ontology of organism-environment relations. Theory in Biosciences 121(2): 139-162 (2002)
- 2001
- [j3]Barry Smith, David M. Mark: Geographical categories: an ontological investigation. International Journal of Geographical Information Science 15(7): 591-612 (2001)
- [c11]
- [c10]
- [c9]David M. Mark, André Skupin, Barry Smith: Features, Objects, and Other Things: Ontological Distinctions in the Geographic Domain. COSIT 2001: 489-502
- [c8]Wolfgang Degen, Barbara Heller, Heinrich Herre, Barry Smith: GOL: toward an axiomatized upper-level ontology. FOIS 2001: 34-46
- [c7]
- [c6]Barry Smith, Christopher A. Welty: FOIS introduction: Ontology - towards a new synthesis. FOIS 2001: iii-ix
1990 – 1999
- 1999
- [c5]
- [c4]
- [c3]David M. Mark, Barry Smith, Barbara Tversky: Ontology and Geographic Objects: An Empirical Study of Cognitive Categorization. COSIT 1999: 283-298
- 1997
- [c2]Barry Smith, Achille C. Varzi: Fiat and Bona Fide Boundaries: Towards on Ontology of Spatially Extended Objects. COSIT 1997: 103-119
- 1996
- [j2]Barry Smith: Mereotopology: A Theory of Parts and Boundaries. Data Knowl. Eng. 20(3): 287-303 (1996)
- 1995
- [j1]Barry Smith: Formal ontology, common sense and cognitive science. Int. J. Hum.-Comput. Stud. 43(5-6): 641-667 (1995)
- [c1]
Coauthor Index
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last updated on 2013-06-06 20:13 CEST by the dblp team