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Paul T. Spellman
2010 – today
- 2013
[j15]Hang Chang, Ju Han, Alexander Borowsky, Leandro A. Loss, Joe W. Gray, Paul T. Spellman, Bahram Parvin: Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association. IEEE Trans. Med. Imaging 32(4): 670-682 (2013)- 2012
- [j14]Steven M. Hill, Yiling Lu, Jennifer Molina, Laura Heiser, Paul T. Spellman, Terence P. Speed, Joe W. Gray, Gordon B. Mills, Sach Mukherjee: Bayesian Inference of Signaling Network Topology in a Cancer Cell Line. Bioinformatics 28(21): 2804-2810 (2012)
- [j13]Steven M. Hill, Richard M. Neve, Nora Bayani, Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Sach Mukherjee: Integrating biological knowledge into variable selection: an empirical Bayes approach with an application in cancer biology. BMC Bioinformatics 13: 94 (2012)
- [j12]Hang Chang, Ju Han, Paul T. Spellman, Bahram Parvin: Multireference Level Set for the Characterization of Nuclear Morphology in Glioblastoma Multiforme. IEEE Trans. Biomed. Engineering 59(12): 3460-3467 (2012)
- [c5]Quoc V. Le, Ju Han, Joe W. Gray, Paul T. Spellman, Alexander Borowsky, Bahram Parvin: Learning invariant features of tumor signatures. ISBI 2012: 302-305
- [c4]Hang Chang, Leandro A. Loss, Paul T. Spellman, Alexander Borowsky, Bahram Parvin: Batch-invariant nuclear segmentation in whole mount histology sections. ISBI 2012: 856-859
- [c3]Ju Han, Hang Chang, Gerald Fontenay, Paul T. Spellman, Alexander Borowsky, Bahram Parvin: Molecular bases of morphometric composition in Glioblastoma multiforme. ISBI 2012: 1631-1634
- 2011
- [j11]Adam B. Olshen, Henrik Bengtsson, Pierre Neuvial, Paul T. Spellman, Richard A. Olshen, Venkatraman E. Seshan: Parent-specific copy number in paired tumor-normal studies using circular binary segmentation. Bioinformatics 27(15): 2038-2046 (2011)
- [j10]Hang Chang, Gerald Fontenay, Ju Han, Ge Cong, Frederick L. Baehner, Joe W. Gray, Paul T. Spellman, Bahram Parvin: Morphometic analysis of TCGA glioblastoma multiforme. BMC Bioinformatics 12: 484 (2011)
- [c2]Ju Han, Hang Chang, Leandro A. Loss, Kai Zhang, Frederick L. Baehner, Joe W. Gray, Paul T. Spellman, Bahram Parvin: Comparison of sparse coding and kernel methods for histopathological classification of gliobastoma multiforme. ISBI 2011: 711-714
- 2010
- [j9]Leandro A. Loss, Anguraj Sadanandam, Steffen Durinck, Shivani Nautiya, Diane Flaucher, Victoria E. H. Carlton, Martin Moorhead, Yontao Lu, Joe W. Gray, Malek Faham, Paul T. Spellman, Bahram Parvin: Prediction of epigenetically regulated genes in breast cancer cell lines. BMC Bioinformatics 11: 305 (2010)
2000 – 2009
- 2009
- [j8]Sach Mukherjee, Steven Pelech, Richard M. Neve, Wen-Lin Kuo, Safiyyah Ziyad, Paul T. Spellman, Joe W. Gray, Terence P. Speed: Sparse combinatorial inference with an application in cancer biology. Bioinformatics 25(2): 265-271 (2009)
- [j7]Henrik Bengtsson, Amrita Ray, Paul T. Spellman, Terence P. Speed: A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods. Bioinformatics 25(7): 861-867 (2009)
- [j6]Steffen Durinck, James H. Bullard, Paul T. Spellman, Sandrine Dudoit: GenomeGraphs: integrated genomic data visualization with R. BMC Bioinformatics 10 (2009)
- 2007
- [c1]Bahram Parvin, Nirmalya Ghosh, Laura Heiser, Merrill Knapp, Carolyn L. Talcott, Keith Laderoute, Joe W. Gray, Paul T. Spellman: Spectral Decomposition of Signaling Networks. CIBCB 2007: 76-81
- 2006
- [j5]Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert Jr., Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen E. Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brazma: A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics 7: 489 (2006)
- 2005
- [j4]
- 2002
- [j3]Catherine A. Ball, Gavin Sherlock, Helen E. Parkinson, Philippe Rocca-Serra, Catherine Brooksbank, Helen C. Causton, Duccio Cavalieri, Terry Gaasterland, Pascal Hingamp, Frank Holstege, Martin Ringwald, Paul T. Spellman, Christian J. Stoeckert Jr., Jason E. Stewart, Ronald Taylor, Alvis Brazma, John Quackenbush: An open letter to the scientific journals. Bioinformatics 18(11): 1409 (2002)
- 2001
- [j2]Paul T. Spellman: Editorial: The Future of Publishing Microarray Data. Briefings in Bioinformatics 2(4): 316-318 (2001)
- [j1]Gavin Sherlock, Tina Hernandez-Boussard, Andrew Kasarskis, Gail Binkley, John C. Matese, Selina S. Dwight, Miroslava Kaloper, Shuai Weng, Heng Jin, Catherine A. Ball, Michael B. Eisen, Paul T. Spellman, Patrick O. Brown, David Botstein, J. Michael Cherry: The Stanford Microarray Database. Nucleic Acids Research 29(1): 152-155 (2001)
Coauthor Index
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last updated on 2013-05-13 21:38 CEST by the dblp team