David J. States

Maureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn, Brian D. Athey, Alla Karnovsky: Metab2MeSH: annotating compounds with medical subject headings. Bioinformatics 28(10): 1408-1410 (2012)

Gang Su, Allan Kuchinsky, John H. Morris, David J. States, Fan Meng: GLay: community structure analysis of biological networks. Bioinformatics 26(24): 3135-3137 (2010)

Arvind Rao, David J. States, Alfred O. Hero III, James Douglas Engel: Understanding Distal transcriptional Regulation from Sequence, Expression and interactome Perspectives. J. Bioinformatics and Computational Biology 8(2): 219-246 (2010)

Jing Gao, Alexander S. Ade, V. Glenn Tarcea, Terry E. Weymouth, Barbara R. Mirel, H. V. Jagadish, David J. States: Integrating and annotating the interactome using the MiMI plugin for cytoscape. Bioinformatics 25(1): 137-138 (2009)

Junguk Hur, Adam D. Schuyler, David J. States, Eva L. Feldman: SciMiner: web-based literature mining tool for target identification and functional enrichment analysis. Bioinformatics 25(6): 838-840 (2009)

David J. States, Alexander S. Ade, Zachary C. Wright, Aaron V. Bookvich, Brian D. Athey: MiSearch adaptive pubMed search tool. Bioinformatics 25(7): 974-976 (2009)

V. Glenn Tarcea, Terry E. Weymouth, Alexander S. Ade, Aaron V. Bookvich, Jing Gao, Vasudeva Mahavisno, Zach Wright, Adriane Chapman, Magesh Jayapandian, Arzucan Özgür, Yuanyuan Tian, James D. Cavalcoli, Barbara Mirel, Jignesh M. Patel, Dragomir R. Radev, Brian D. Athey, David J. States, H. V. Jagadish: Michigan molecular interactions r2: from interacting proteins to pathways. Nucleic Acids Research 37(Database-Issue): 642-646 (2009)

Maital Ashkenazi, Gary D. Bader, Allan Kuchinsky, Menachem Moshelion, David J. States: Cytoscape ESP: simple search of complex biological networks. Bioinformatics 24(12): 1465-1466 (2008)

Sirarat Sarntivijai, Alexander S. Ade, Brian D. Athey, David J. States: A bioinformatics analysis of the cell line nomenclature. Bioinformatics 24(23): 2760-2766 (2008)

Aaron Elkiss, Siwei Shen, Anthony Fader, Günes Erkan, David J. States, Dragomir R. Radev: Blind men and elephants: What do citation summaries tell us about a research article? JASIST 59(1): 51-62 (2008)

Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel: Using Directed Information to Build Biologically Relevant Influence Networks. J. Bioinformatics and Computational Biology 6(3): 493-519 (2008)

Yuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel: SAGA: a subgraph matching tool for biological graphs. Bioinformatics 23(2): 232-239 (2007)

Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel: Inferring Time-Varying Network Topologies from Gene Expression Data. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)

Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel: Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information. EURASIP J. Bioinformatics and Systems Biology 2007 (2007)

Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian D. Athey, David J. States, H. V. Jagadish: Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Research 35(Database-Issue): 566-571 (2007)

Yili Chen, Thomas W. Blackwell, Ji Chen, Jing Gao, Angel W. Lee, David J. States: Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function. PLoS Computational Biology 3(4) (2007)

Carlos Santos, Daniela Eggle, David J. States: Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction. Bioinformatics 21(8): 1653-1658 (2005)

H. V. Jagadish, David J. States, Burkhard Rost: ISMB 2005. ISMB (Supplement of Bioinformatics) 2005: 1-2

H. V. Jagadish, David J. States, Burkhard Rost: ISMB 2005 Organization. ISMB (Supplement of Bioinformatics) 2005: 3-6

David J. States: Time to defend what we have won. Bioinformatics 17(4): 299 (2001)

Rongxiang Liu, Thomas W. Blackwell, David J. States: Conformational model for binding site recognition by the E.coli MetJ transcription factor. Bioinformatics 17(7): 622-633 (2001)

David J. States, Volker Nowotny, Thomas W. Blackwell: Probabilistic approaches to the use of higher order clone relationships in physical map assembly. ISMB (Supplement of Bioinformatics) 2001: 262-269

Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States: UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences. ISMB 2000: 218-227

Thomas W. Blackwell, Eric C. Rouchka, David J. States: Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions. ISMB 1999: 54-59

Pankaj Agarwal, David J. States: Comparative accuracy of methods for protein sequence similarity search. Bioinformatics 14(1): 40-47 (1998)

Eric C. Rouchka, David J. States: Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis. ISMB 1998: 140-147

Rongxiang Liu, Thomas W. Blackwell, David J. States: A structure based similarity measure for nucleic acid sequence comparison. RECOMB 1998: 173-181

David G. Politte, David R. Maffitt, David J. States: Estimation of allele frequencies from color-multiplexed electropherograms. RECOMB 1998: 202-206

Pankaj Agarwal, David J. States: A Bayesian Evolutionary Distance for Parametrically Aligned Sequences. Journal of Computational Biology 3(1): 1-17 (1996)

David J. States, Pankaj Agarwal: Compact Encoding Strategies for DNA Sequence Similarity Search. ISMB 1996: 211-217

David J. States, Pankaj Agarwal, Terry Gaasterland, Lawrence Hunter, Randall Smith (Eds.): Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996. AAAI 1996, isbn 1-57735-002-2

David J. States, Warren Gish: QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification. Journal of Computational Biology 1(1): 39-50 (1994)

Toni Kazic, David J. States, Lloyd Allison: Motifs in Biology: Analysis of Ambiguous Data: Introduction. HICSS (5) 1994: 224

Pankaj Agarwal, David J. States: The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome. ISMB 1994: 1-9

Jean-Michel Claverie, David J. States: Information Enhancement Methods for Large Scale Sequence Analysis. Computers & Chemistry 17(2): 191-201 (1993)

David J. States, Nomi L. Harris, Lawrence Hunter: Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification. ISMB 1993: 387-394

Lawrence Hunter, David J. States: Bayesian Classification of Protein Structure. IEEE Expert 7(4): 67-75 (1992)

Nomi L. Harris, Lawrence Hunter, David J. States: Mega-Classification: Discovering Motifs in Massive Datastreams. AAAI 1992: 837-842

Lawrence Hunter, Nomi L. Harris, David J. States: Efficient Classification of Massive, Unsegmented Datastreams. ML 1992: 224-232