Christoph Steinbeck

Paula de Matos, Jennifer A. Cham, Hong Cao, Rafael Alcántara, Francis Rowland, Rodrigo Lopez, Christoph Steinbeck: The Enzyme Portal: A case study in applying user-centred design methods in bioinformatics. BMC Bioinformatics 14: 103 (2013)

Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Bhavana Harsha, Namrata Kale, Venkatesh Muthukrishnan, Gareth Owen, Steve Turner, Mark Williams, Christoph Steinbeck: The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013. Nucleic Acids Research 41(Database-Issue): 456-463 (2013)

Rafael Alcántara, Joseph Onwubiko, Hong Cao, Paula de Matos, Jennifer A. Cham, Jules Jacobsen, Gemma L. Holliday, Julia D. Fischer, Syed Asad Rahman, Bijay Jassal, Mickael Goujon, Francis Rowland, Sameer Velankar, Rodrigo Lopez, John P. Overington, Gerard J. Kleywegt, Henning Hermjakob, Claire O'Donovan, Maria Jesus Martin, Janet M. Thornton, Christoph Steinbeck: The EBI enzyme portal. Nucleic Acids Research 41(Database-Issue): 773-780 (2013)

Kenneth Haug, Reza M. Salek, Pablo Conesa, Janna Hastings, Paula de Matos, Mark Rijnbeek, Tejasvi Mahendraker, Mark Williams, Steffen Neumann, Philippe Rocca-Serra, Eamonn Maguire, Alejandra González Beltrán, Susanna-Assunta Sansone, Julian L. Griffin, Christoph Steinbeck: MetaboLights - an open-access general-purpose repository for metabolomics studies and associated meta-data. Nucleic Acids Research 41(Database-Issue): 781-786 (2013)

Leonid L. Chepelev, Janna Hastings, Marcus Ennis, Christoph Steinbeck, Michel Dumontier: Self-organizing ontology of biochemically relevant small molecules. BMC Bioinformatics 13: 3 (2012)

Kalai Vanii, Pablo Moreno, Andreas Truszkowski, Peter Ertl, Christoph Steinbeck: Natural product-likeness score revisited: an open-source, open-data implementation. BMC Bioinformatics 13: 106 (2012)

Janna Hastings, Despoina Magka, Colin R. Batchelor, Lian Duan, Robert Stevens, Marcus Ennis, Christoph Steinbeck: Structure-based classification and ontology in chemistry. J. Cheminformatics 4: 8 (2012)

Rafael Alcántara, Kristian B. Axelsen, Anne Morgat, Eugeni Belda, Elisabeth Coudert, Alan Bridge, Hong Cao, Paula de Matos, Marcus Ennis, Steve Turner, Gareth Owen, Lydie Bougueleret, Ioannis Xenarios, Christoph Steinbeck: Rhea - a manually curated resource of biochemical reactions. Nucleic Acids Research 40(Database-Issue): 754-760 (2012)

Katrina Pavelin, Jennifer A. Cham, Paula de Matos, Catherine Brooksbank, Graham Cameron, Christoph Steinbeck: Bioinformatics Meets User-Centred Design: A Perspective. PLoS Computational Biology 8(7) (2012)

Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Venkatesh Muthukrishnan, Steve Turner, Gareth Owen, Christoph Steinbeck: Modular Extensions to the ChEBI Ontology. ICBO 2012

Janna Hastings, Colin R. Batchelor, Fabian Neuhaus, Christoph Steinbeck: What's in an `is about' link? Chemical diagrams and the Information Artifact Ontology. CoRR abs/1204.4805 (2012)

Noel M. O'Boyle, Rajarshi Guha, Egon L. Willighagen, Sam E. Adams, Jonathan Alvarsson, Jean-Claude Bradley, Igor V. Filippov, Robert M. Hanson, Marcus D. Hanwell, Geoffrey R. Hutchison, Craig A. James, Nina Jeliazkova, Andrew S. I. D. Lang, Karol M. Langner, David C. Lonie, Daniel M. Lowe, Jérôme Pansanel, Dmitry Pavlov, Ola Spjuth, Christoph Steinbeck, Adam L. Tenderholt, Kevin J. Theisen, Peter Murray-Rust: Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on. J. Cheminformatics 3: 37 (2011)

Andreas Truszkowski, Kalai Jayaseelan, Stefan Neumann, Egon L. Willighagen, Achim Zielesny, Christoph Steinbeck: New developments on the cheminformatics open workflow environment CDK-Taverna. J. Cheminformatics 3: 54 (2011)

Janna Hastings, Colin R. Batchelor, Fabian Neuhaus, Christoph Steinbeck: What's in an 'is about' Link? Chemical Diagrams and the Information Artifact Ontology. ICBO 2011

Janna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Kenneth Haug, Zara Josephs, Gareth Owen, Steve Turner, Christoph Steinbeck: Recent Developments in the ChEBI Ontology. ICBO 2011

Ying Yan, Janna Hastings, Jee-Hyub Kim, Stefan Schulz, Christoph Steinbeck, Dietrich Rebholz-Schuhmann: Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules. ICBO 2011

Janna Hastings, Ludger Jansen, Christoph Steinbeck, Stefan Schulz: Modelling Threshold Phenomena in OWL: Metabolite Concentrations as Evidence For Disorders. OWLED 2011

Janna Hastings, Colin R. Batchelor, Christoph Steinbeck, Stefan Schulz: Modularization Requirements in Bio-Ontologies: A Case Study of ChEbi. WoMO 2011: 63-70

Thomas Kuhn, Egon L. Willighagen, Achim Zielesny, Christoph Steinbeck: CDK-Taverna: an open workflow environment for cheminformatics. BMC Bioinformatics 11: 159 (2010)

Paula de Matos, Rafael Alcántara, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Inmaculada Spiteri, Steve Turner, Christoph Steinbeck: Chemical Entities of Biological Interest: an update. Nucleic Acids Research 38(Database-Issue): 249-254 (2010)

Janna Hastings, Colin R. Batchelor, Christoph Steinbeck, Stefan Schulz: What are chemical structures and their relations? FOIS 2010: 257-270

Colin R. Batchelor, Janna Hastings, Christoph Steinbeck: Ontological dependence, dispositions and institutional reality in chemistry. FOIS 2010: 271-284

Janna Hastings, Michel Dumontier, Duncan Hull, Matthew Horridge, Christoph Steinbeck, Robert Stevens, Ulrike Sattler, Tertia Hörne, Katarina Britz: Representing Chemicals Using OWL, Description Graphs and Rules. OWLED 2010

Ola Spjuth, Jonathan Alvarsson, Arvid Berg, Martin Eklund, Stefan Kuhn, Carl Mäsak, Gilleain M. Torrance, Johannes Wagener, Egon L. Willighagen, Christoph Steinbeck, Jarl E. S. Wikberg: Bioclipse 2: A scriptable integration platform for the life sciences. BMC Bioinformatics 10: 397 (2009)

Mark Rijnbeek, Christoph Steinbeck: OrChem - An open source chemistry search engine for Oracle^®. J. Cheminformatics 1: 17 (2009)

Nico Adams, Paula de Matos, Adriano Dekker, Marcus Ennis, Janna Hastings, Kenneth Haug, Duncan Hull, Zara Josephs, Pablo Moreno, Steve Turner, Christoph Steinbeck: Semantic access to chemistry data with the ChEBI ontology and web services. SWAT4LS 2009

Stefan Kuhn, Björn Egert, Steffen Neumann, Christoph Steinbeck: Building blocks for automated elucidation of metabolites: Machine learning methods for NMR prediction. BMC Bioinformatics 9 (2008)

Ola Spjuth, Tobias Helmus, Egon L. Willighagen, Stefan Kuhn, Martin Eklund, Johannes Wagener, Peter Murray-Rust, Christoph Steinbeck, Jarl E. S. Wikberg: Bioclipse: an open source workbench for chemo- and bioinformatics. BMC Bioinformatics 8 (2007)

Egon L. Willighagen, Noel M. O'Boyle, Harini Gopalakrishnan, Dazhi Jiao, Rajarshi Guha, Christoph Steinbeck, David J. Wild: Userscripts for the Life Sciences. BMC Bioinformatics 8 (2007)

Rajarshi Guha, Michael T. Howard, Geoffrey R. Hutchison, Peter Murray-Rust, Henry S. Rzepa, Christoph Steinbeck, Jörg K. Wegner, Egon L. Willighagen: The Blue Obelisk-Interoperability in Chemical Informatics. Journal of Chemical Information and Modeling 46(3): 991-998 (2006)

Yongquan Han, Christoph Steinbeck: Evolutionary-Algorithm-Based Strategy for Computer-Assisted Structure Elucidation. Journal of Chemical Information and Modeling 44(2): 489-498 (2004)

Christoph Steinbeck, Yongquan Han, Stefan Kuhn, Oliver Horlacher, Edgar Luttmann, Egon L. Willighagen: The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics. Journal of Chemical Information and Computer Sciences 43(2): 493-500 (2003)

Christoph Steinbeck, Stefan Krause, Stefan Kuhn: NMRShiftDB-Constructing a Free Chemical Information System with Open-Source Components. Journal of Chemical Information and Computer Sciences 43(6): 1733-1739 (2003)

Christoph Steinbeck: SENECA: A Platform-Independent, Distributed, and Parallel System for Computer-Assisted Structure Elucidation in Organic Chemistry. Journal of Chemical Information and Computer Sciences 41(6): 1500-1507 (2001)

Christoph Steinbeck, Kurt Berlin, Clemens Richert: MASP-A Program Predicting Mass Spectra of Combinatorial Libraries. Journal of Chemical Information and Computer Sciences 37(3): 449-457 (1997)