Sumio Sugano

Riu Yamashita, Sumio Sugano, Yutaka Suzuki, Kenta Nakai: DBTSS: DataBase of Transcriptional Start Sites progress report in 2012. Nucleic Acids Research 40(Database-Issue): 150-154 (2012)

Josef Tuda, Arthur E. Mongan, Mohammed E. M. Tolba, Mihoko Imada, Junya Yamagishi, Xuenan Xuan, Hiroyuki Wakaguri, Sumio Sugano, Chihiro Sugimoto, Yutaka Suzuki: Full-parasites: database of full-length cDNAs of apicomplexa parasites, 2010 update. Nucleic Acids Research 39(Database-Issue): 625-631 (2011)

Jun-ichi Takeda, Yutaka Suzuki, Ryuichi Sakate, Yoshiharu Sato, Takashi Gojobori, Tadashi Imanishi, Sumio Sugano: H-DBAS: human-transcriptome database for alternative splicing: update 2010. Nucleic Acids Research 38(Database-Issue): 86-90 (2010)

Riu Yamashita, Hiroyuki Wakaguri, Sumio Sugano, Yutaka Suzuki, Kenta Nakai: DBTSS provides a tissue specific dynamic view of Transcription Start Sites. Nucleic Acids Research 38(Database-Issue): 98-104 (2010)

Kouichi Kimura, Yutaka Suzuki, Sumio Sugano, Asako Koike: Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences. Journal of Computational Biology 16(11): 1601-1613 (2009)

Hiroyuki Wakaguri, Yutaka Suzuki, Toshiaki Katayama, Shuichi Kawashima, Eri Kibukawa, Kazushi Hiranuka, Masahide Sasaki, Sumio Sugano, Junichi Watanabe: Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009. Nucleic Acids Research 37(Database-Issue): 520-525 (2009)

Yukio Maruyama, Ai Wakamatsu, Yoshifumi Kawamura, Kouichi Kimura, Jun-ichi Yamamoto, Tetsuo Nishikawa, Yasutomo Kisu, Sumio Sugano, Naoki Goshima, Takao Isogai, Nobuo Nomura: Human Gene and Protein Database (HGPD): a novel database presenting a large quantity of experiment-based results in human proteomics. Nucleic Acids Research 37(Database-Issue): 762-766 (2009)

Hiroyuki Wakaguri, Riu Yamashita, Yutaka Suzuki, Sumio Sugano, Kenta Nakai: DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Research 36(Database-Issue): 97-101 (2008)

Budrul Ahsan, Daisuke Kobayashi, Tomoyuki Yamada, Masahiro Kasahara, Shin Sasaki, Taro L. Saito, Yukinobu Nagayasu, Koichiro Doi, Yoichiro Nakatani, Wei Qu, Tomoko Jindo, Atsuko Shimada, Kiyoshi Naruse, Atsushi Toyoda, Yoko Kuroki, Asao Fujiyama, Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Nobuyoshi Shimizu, Shin-ichi Hashimoto, Jun Yang, Yongjun Lee, Kouji Matsushima, Sumio Sugano, Mitsuru Sakaizumi, Takanori Narita, Kazuko Ohishi, Shinobu Haga, Fumiko Ohta, Hisayo Nomoto, Keiko Nogata, Tomomi Morishita, Tomoko Endo, Tadasu Shin-I, Hiroyuki Takeda, Yuji Kohara, Shinichi Morishita: UTGB/medaka: genomic resource database for medaka biology. Nucleic Acids Research 36(Database-Issue): 747-752 (2008)

Ayumu Saito, Masao Nagasaki, Masaaki Oyama, Hiroko Kozuka-Hata, Kentaro Semba, Sumio Sugano, Tadashi Yamamoto, Satoru Miyano: AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction. BMC Bioinformatics 8 (2007)

Jun-ichi Takeda, Yutaka Suzuki, Mitsuteru Nakao, Tsuyoshi Kuroda, Sumio Sugano, Takashi Gojobori, Tadashi Imanishi: H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational. Nucleic Acids Research 35(Database-Issue): 104-109 (2007)

Junichi Watanabe, Hiroyuki Wakaguri, Masahide Sasaki, Yutaka Suzuki, Sumio Sugano: Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs. Nucleic Acids Research 35(Database-Issue): 431-438 (2007)

Riu Yamashita, Yutaka Suzuki, Hiroyuki Wakaguri, Katsuki Tsuritani, Kenta Nakai, Sumio Sugano: DBTSS: DataBase of Human Transcription Start Sites, progress report 2006. Nucleic Acids Research 34(Database-Issue): 86-89 (2006)

Yasuhiro Kasai, Shin-ichi Hashimoto, Tomoyuki Yamada, Jun Sese, Sumio Sugano, Kouji Matsushima, Shinichi Morishita: 5'SAGE: 5'-end Serial Analysis of Gene Expression database. Nucleic Acids Research 33(Database-Issue): 550-552 (2005)

Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Alexander E. Kel, Takahiro Arakawa, Piero Carninci, Jun Kawai, Yoshihide Hayashizaki, Toshihisa Takagi, Kenta Nakai, Sumio Sugano: Large-scale collection and characterization of promoters of human and mouse genes. In Silico Biology 4 (2004)

Yutaka Suzuki, Riu Yamashita, Sumio Sugano, Kenta Nakai: BTSS, DataBase of Transcriptional Start Sites: progress report 2004. Nucleic Acids Research 32(Database-Issue): 78-81 (2004)

Junichi Watanabe, Yutaka Suzuki, Masahide Sasaki, Sumio Sugano: Full-malaria 2004: an enlarged database for comparative studies of full-length cDNAs of malaria parasites, Plasmodium species. Nucleic Acids Research 32(Database-Issue): 334-338 (2004)

Yutaka Suzuki, Riu Yamashita, Kenta Nakai, Sumio Sugano: DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs. Nucleic Acids Research 30(1): 328-331 (2002)

Kazuko Shiroki, Chieko Ohsawa, Natuki Sugi, Motoaki Wakiyama, Kin-ichiro Miura, Manabu Watanabe, Yutaka Suzuki, Sumio Sugano: Internal ribosome entry site-mediated translation of Smad5 in vivo: requirement for a nuclear event. Nucleic Acids Research 30(13): 2851-2861 (2002)

Tetsuo Nishikawa, Toshio Ota, Yuri Kawai, Shizuko Ishii, Kaoru Saito, Jun-ichi Yamamoto, Ai Wakamatsu, Masashi Ozawa, Yutaka Suzuki, Sumio Sugano, Takao Isogai: Database and analysis system for cDNA clones obtained from full-length enriched cDNA libraries. In Silico Biology 2: 2 (2001)

Tetsuo Nishikawa, Toshio Ota, Yuri Kawai, Shizuko Ishii, Kaoru Saito, Jun-ichi Yamamoto, Ai Wakamatsu, Masashi Ozawa, Yutaka Suzuki, Sumio Sugano, Takao Isogai: Database and analysis system for cDNA clones obtained from full-length enriched cDNA libraries. In Silico Biology 2: 2 (2001)

Junichi Watanabe, Masahide Sasaki, Yutaka Suzuki, Sumio Sugano: FULL-malaria: a database for a full-length enriched cDNA library from human malaria parasite, Plasmodium falciparum. Nucleic Acids Research 29(1): 70-71 (2001)

Henrik T. Yudate, Makiko Suwa, Ryotaro Irie, Hiroshi Matsui, Tetsuo Nishikawa, Yoshitaka Nakamura, Daisuke Yamaguchi, Zhang Zhi Peng, Tomoyuki Yamamoto, Keiichi Nagai, Koji Hayashi, Tetsuji Otsuki, Tomoyasu Sugiyama, Toshio Ota, Yutaka Suzuki, Sumio Sugano, Takao Isogai, Yasuhiko Masuho: HUNT: launch of a full-length cDNA database from the Helix Research Institute. Nucleic Acids Research 29(1): 185-188 (2001)