Hideaki Sugawara

Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul J. P. Bonnal, José M. Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi: The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications. J. Biomedical Semantics 2: 4 (2011)

Rasko Leinonen, Hideaki Sugawara, Martin Shumway: The Sequence Read Archive. Nucleic Acids Research 39(Database-Issue): 19-21 (2011)

Eli Kaminuma, Takehide Kosuge, Yuichi Kodama, Hideo Aono, Jun Mashima, Takashi Gojobori, Hideaki Sugawara, Osamu Ogasawara, Toshihisa Takagi, Kousaku Okubo, Yasukazu Nakamura: DDBJ progress report. Nucleic Acids Research 39(Database-Issue): 22-27 (2011)

Keiichi Homma, Koji Suzuki, Hideaki Sugawara: The Autophagy Database: an all-inclusive information resource on autophagy that provides nourishment for research. Nucleic Acids Research 39(Database-Issue): 986-990 (2011)

Yeondae Kwon, Hideaki Sugawara, Shogo Shimizu, Satoru Miyazaki: Associated Disease Frequency-based Measure for Finding Candidate Target Genes from the Biomedical Literature. CISIS 2011: 524-529

Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul J. P. Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José M. Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi: The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomedical Semantics 1: 8 (2010)

Yukiko Yamazaki, Ryo Akashi, Yutaka Banno, Takashi Endo, Hiroshi Ezura, Kaoru Fukami-Kobayashi, Kazuo Inaba, Tadashi Isa, Katsuhiko Kamei, Fumie Kasai, Masatomo Kobayashi, Nori Kurata, Makoto Kusaba, Tetsuro Matuzawa, Shohei Mitani, Taro Nakamura, Yukio Nakamura, Norio Nakatsuji, Kiyoshi Naruse, Hironori Niki, Eiji Nitasaka, Yuichi Obata, Hitoshi Okamoto, Moriya Okuma, Kazuhiro Sato, Tadao Serikawa, Toshihiko Shiroishi, Hideaki Sugawara, Hideko Urushibara, Masatoshi Yamamoto, Yoshio Yaoita, Atsushi Yoshiki, Yuji Kohara: NBRP databases: databases of biological resources in Japan. Nucleic Acids Research 38(Database-Issue): 26-32 (2010)

Martin Shumway, Guy Cochrane, Hideaki Sugawara: Archiving next generation sequencing data. Nucleic Acids Research 38(Database-Issue): 870-871 (2010)

Hideaki Sugawara, Kazuho Ikeo, Satoshi Fukuchi, Takashi Gojobori, Yoshio Tateno: DDBJ dealing with mass data produced by the second generation sequencer. Nucleic Acids Research 37(Database-Issue): 16-18 (2009)

Satoshi Fukuchi, Keiichi Homma, Shigetaka Sakamoto, Hideaki Sugawara, Yoshio Tateno, Takashi Gojobori, Ken Nishikawa: The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions. Nucleic Acids Research 37(Database-Issue): 333-337 (2009)

Yeondae Kwon, Yasumasa Shigemoto, Yoshikazu Kuwana, Hideaki Sugawara: Web API for biology with a workflow navigation system. Nucleic Acids Research 37(Web-Server-Issue): 11-16 (2009)

Hideaki Sugawara, Osamu Ogasawara, Kousaku Okubo, Takashi Gojobori, Yoshio Tateno: DDBJ with new system and face. Nucleic Acids Research 36(Database-Issue): 22-24 (2008)

Naoto Tanaka, Masataka Uchino, Satoru Miyazaki, Hideaki Sugawara: Identification of discriminative characteristics for clusters from biologic data with InforBIO software. BMC Bioinformatics 8 (2007)

Hideaki Sugawara, Takashi Abe, Takashi Gojobori, Yoshio Tateno: DDBJ working on evaluation and classification of bacterial genes in INSDC. Nucleic Acids Research 35(Database-Issue): 13-15 (2007)

Masaki Hirahata, Takashi Abe, Naoto Tanaka, Yoshikazu Kuwana, Yasumasa Shigemoto, Satoru Miyazaki, Yoshiyuki Suzuki, Hideaki Sugawara: Genome Information Broker for Viruses (GIB-V): database for comparative analysis of virus genomes. Nucleic Acids Research 35(Database-Issue): 339-342 (2007)

Naoto Tanaka, Takashi Abe, Satoru Miyazaki, Hideaki Sugawara: G-InforBIO: integrated system for microbial genomics. BMC Bioinformatics 7: 368 (2006)

Kousaku Okubo, Hideaki Sugawara, Takashi Gojobori, Yoshio Tateno: DDBJ in preparation for overview of research activities behind data submissions. Nucleic Acids Research 34(Database-Issue): 6-9 (2006)

Yoshio Tateno, Naruya Saitou, Kousaku Okubo, Hideaki Sugawara, Takashi Gojobori: DDBJ in collaboration with mass-sequencing teams on annotation. Nucleic Acids Research 33(Database-Issue): 25-28 (2005)

Satoru Miyazaki, Hideaki Sugawara, Kazuho Ikeo, Takashi Gojobori, Yoshio Tateno: DBJ in the stream of various biological data. Nucleic Acids Research 32(Database-Issue): 31-34 (2004)

Hideaki Sugawara: Gene Trek in Procaryote Space Powered by a GRID Environment. LSGRID 2004: 1-7

Satoru Miyazaki, Hideaki Sugawara, Takashi Gojobori, Yoshio Tateno: DNA Data Bank of Japan (DDBJ) in XML. Nucleic Acids Research 31(1): 13-16 (2003)

Chenna Ramu, Hideaki Sugawara, Tadashi Koike, Rodrigo Lopez, Toby J. Gibson, Desmond G. Higgins, Julie Dawn Thompson: Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Research 31(13): 3497-3500 (2003)

Hideaki Sugawara, Satoru Miyazaki: AHMII: Agent to Help Microbial Information Integration. Nucleic Acids Research 31(13): 3727-3728 (2003)

Hideaki Sugawara, Satoru Miyazaki: Biological SOAP servers and web services provided by the public sequence data bank. Nucleic Acids Research 31(13): 3836-3839 (2003)

Satoru Miyazaki, Hideaki Sugawara: Networking of Biological Resource Centers: WDCM experiences. Data Science Journal 1(2): 102-107 (2002)

Yoshio Tateno, Tadashi Imanishi, Satoru Miyazaki, Kaoru Fukami-Kobayashi, Naruya Saitou, Hideaki Sugawara, Takashi Gojobori: DNA Data Bank of Japan (DDBJ) for genome scale research in life science. Nucleic Acids Research 30(1): 27-30 (2002)

Masaki Fumoto, Satoru Miyazaki, Hideaki Sugawara: Genome Information Broker (GIB): data retrieval and comparative analysis system for completed microbial genomes and more. Nucleic Acids Research 30(1): 66-68 (2002)

Yoshio Tateno, Satoru Miyazaki, Motonori Ota, Hideaki Sugawara, Takashi Gojobori: DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams. Nucleic Acids Research 28(1): 24-26 (2000)

Hideaki Sugawara, Satoru Miyazaki, Takashi Gojobori, Yoshio Tateno: DNA Data Bank of Japan dealing with large-scale data submission. Nucleic Acids Research 27(1): 25-28 (1999)

Toshitsugu Okayama, Takuro Tamura, Takashi Gojobori, Yoshio Tateno, Kazuho Ikeo, Satoru Miyazaki, Kaoru Fukami-Kobayashi, Hideaki Sugawara: Formal design and implementation of an improved DDBJ DNA database with a new schema and object-oriented library. Bioinformatics 14(6): 472-478 (1998)

Yoshio Tateno, Kaoru Fukami-Kobayashi, Satoru Miyazaki, Hideaki Sugawara, Takashi Gojobori: DNA Data Bank of Japan at work on genome sequence data. Nucleic Acids Research 26(1): 16-20 (1998)

Juncai Ma, Satoru Miyazaki, Hideaki Sugawara: A handy database for culture collections worldwide: CCINFO-PC. Computer Applications in the Biosciences 11(2): 209-212 (1995)

Lunjiang Ling, Junko Shimura, Hideaki Sugawara, Akira Tsugita: Epitope Data Bank. CODATA 1994: 249-254