Hakim Tafer

Ronny Lorenz, Stephan H. F. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker: ViennaRNA Package 2.0. Algorithms for Molecular Biology 6: 26 (2011)

Stephanie Kehr, Sebastian Bartschat, Peter F. Stadler, Hakim Tafer: PLEXY: efficient target prediction for box C/D snoRNAs. Bioinformatics 27(2): 279-280 (2011)

Hakim Tafer, Fabian Amman, Florian Eggenhofer, Peter F. Stadler, Ivo L. Hofacker: Fast accessibility-based prediction of RNA-RNA interactions. Bioinformatics 27(14): 1934-1940 (2011)

Florian Eggenhofer, Hakim Tafer, Peter F. Stadler, Ivo L. Hofacker: RNApredator: fast accessibility-based prediction of sRNA targets. Nucleic Acids Research 39(Web-Server-Issue): 149-154 (2011)

David Langenberger, Sebastian Bartschat, Jana Hertel, Steve Hoffmann, Hakim Tafer, Peter F. Stadler: MicroRNA or Not MicroRNA? BSB 2011: 1-9

Hakim Tafer, Stephanie Kehr, Jana Hertel, Ivo L. Hofacker, Peter F. Stadler: RNAsnoop: efficient target prediction for H/ACA snoRNAs. Bioinformatics 26(5): 610-616 (2010)

Hakim Tafer, Ivo L. Hofacker: RNAplex: a fast tool for RNA-RNA interaction search. Bioinformatics 24(22): 2657-2663 (2008)

Radka Svobodová Vareková, Ivan Bradác, Martin Plchút, Michal Skrdla, Michael Wacenovsky, Helmuth Mahr, Georg Mayer, Herbert Tanner, Hermann Brugger, Josef Withalm, Peter Lederer, Heinrich J. Huber, Gerhard Gierlinger, Ronald Graf, Hakim Tafer, Ivo L. Hofacker, Peter Schuster, Martin Polcík: www.rnaworkbench.com: A new program for analyzing RNA interference. Computer Methods and Programs in Biomedicine 90(1): 89-94 (2008)

Ulrike Mückstein, Hakim Tafer, Stephan H. F. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker: Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics. BIRD 2008: 114-127

Hakim Tafer: RNAplex a Fast and Flexible RNA-RNA Interaction Search Tool. German Conference on Bioinformatics 2007: 56-67

Stephan H. F. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker: Partition function and base pairing probabilities of RNA heterodimers. Algorithms for Molecular Biology 1 (2006)

Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker: Thermodynamics of RNA-RNA binding. Bioinformatics 22(10): 1177-1182 (2006)

Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. F. Bernhart, Peter F. Stadler, Ivo L. Hofacker: Thermodynamics of RNA-RNA Binding. German Conference on Bioinformatics 2005: 3-13