Douglas Thain

Peter Bui, Li Yu, Andrew Thrasher, Rory Carmichael, Irena Lanc, Patrick Donnelly, Douglas Thain: Scripting distributed scientific workflows using Weaver. Concurrency and Computation: Practice and Experience 24(15): 1685-1707 (2012)

Hoang Bui, Peter Bui, Patrick J. Flynn, Douglas Thain: ROARS: a robust object archival system for data intensive scientific computing. Distributed and Parallel Databases 30(5-6): 325-350 (2012)

Christopher Moretti, Andrew Thrasher, Li Yu, Michael Olson, Scott J. Emrich, Douglas Thain: A Framework for Scalable Genome Assembly on Clusters, Clouds, and Grids. IEEE Trans. Parallel Distrib. Syst. 23(12): 2189-2197 (2012)

Patrick Donnelly, Douglas Thain: Fine-Grained Access Control in the Chirp Distributed File System. CCGRID 2012: 33-40

Li Yu, Douglas Thain: Resource Management for Elastic Cloud Workflows. CCGRID 2012: 775-780

Badi Abdul-Wahid, Li Yu, Dinesh Rajan, Haoyun Feng, Eric Darve, Douglas Thain, Jesús A. Izaguirre: Folding proteins at 500 ns/hour with Work Queue. eScience 2012: 1-8

Peter Sempolinski, Douglas Thain, Daniel Wei, Ahsan Kareem: A system for management of Computational Fluid Dynamics simulations for civil engineering. eScience 2012: 1-8

Andrew Thrasher, Douglas Thain, Scott J. Emrich, Zachary Musgrave: Shifting the bioinformatics computing paradigm: A case study in parallelizing genome annotation using MAKER and Work Queue. ICCABS 2012: 1-6

Rory Carmichael, Patrick Braga-Henebry, Douglas Thain, Scott J. Emrich: Biocompute 2.0: an improved collaborative workspace for data intensive bio-science. Concurrency and Computation: Practice and Experience 23(17): 2305-2314 (2011)

Dinesh Rajan, Anthony Canino, Jesús A. Izaguirre, Douglas Thain: Converting a High Performance Application to an Elastic Cloud Application. CloudCom 2011: 383-390

Zhi Zhai, Peter Sempolinski, Douglas Thain, Gregory R. Madey, Daniel Wei, Ahsan Kareem: Expert-Citizen Engineering: "Crowdsourcing" Skilled Citizens. DASC 2011: 879-886

Arthur B. Maccabe, Douglas Thain (Eds.): Proceedings of the 20th ACM International Symposium on High Performance Distributed Computing, HPDC 2011, San Jose, CA, USA, June 8-11, 2011. ACM 2011, isbn 978-1-4503-0552-5

Li Yu, Christopher Moretti, Andrew Thrasher, Scott J. Emrich, Kenneth Judd, Douglas Thain: Harnessing parallelism in multicore clusters with the All-Pairs, Wavefront, and Makeflow abstractions. Cluster Computing 13(3): 243-256 (2010)

Ioan Raicu, Ian T. Foster, Mike Wilde, Zhao Zhang, Kamil Iskra, Peter H. Beckman, Yong Zhao, Alexander S. Szalay, Alok N. Choudhary, Philip Little, Christopher Moretti, Amitabh Chaudhary, Douglas Thain: Middleware support for many-task computing. Cluster Computing 13(3): 291-314 (2010)

Kyle B. Wheeler, Douglas Thain: Visualizing massively multithreaded applications with ThreadScope. Concurrency and Computation: Practice and Experience 22(1): 45-67 (2010)

Christopher Moretti, Hoang Bui, Karen Hollingsworth, Brandon Rich, Patrick J. Flynn, Douglas Thain: All-Pairs: An Abstraction for Data-Intensive Computing on Campus Grids. IEEE Trans. Parallel Distrib. Syst. 21(1): 33-46 (2010)

Peter Sempolinski, Douglas Thain: A Comparison and Critique of Eucalyptus, OpenNebula and Nimbus. CloudCom 2010: 417-426

Patrick Donnelly, Peter Bui, Douglas Thain: Attaching Cloud Storage to a Campus Grid Using Parrot, Chirp, and Hadoop. CloudCom 2010: 488-495

Katarzyna Keahey, Domenico Laforenza, Alexander Reinefeld, Pierluigi Ritrovato, Douglas Thain, Nancy Wilkins-Diehr: Grid, Cluster and Cloud Computing. Euro-Par (1) 2010: 341-342

Paul Brenner, Ryan Jansen, David B. Go, Douglas Thain: Environmentally Opportunistic Computing transforming the data center for economic and environmental sustainability. Green Computing Conference 2010: 383-388

Rory Carmichael, Patrick Braga-Henebry, Douglas Thain, Scott J. Emrich: Biocompute: towards a collaborative workspace for data intensive bio-science. HPDC 2010: 489-498

Hoang Bui, Diane Wright, Clarence Helm, Rachel Witty, Patrick J. Flynn, Douglas Thain: Towards long term data quality in a large scale biometrics experiment. HPDC 2010: 565-572

Peter Bui, Li Yu, Douglas Thain: Weaver: integrating distributed computing abstractions into scientific workflows using Python. HPDC 2010: 636-643

Hoang Bui, Peter Bui, Patrick J. Flynn, Douglas Thain: ROARS: a scalable repository for data intensive scientific computing. HPDC 2010: 766-775

Hoang Bui, Michael Kelly, Christopher Lyon, Mark Pasquier, Deborah Thomas, Patrick J. Flynn, Douglas Thain: Experience with BXGrid: a data repository and computing grid for biometrics research. Cluster Computing 12(4): 373-386 (2009)

Douglas Thain, Christopher Moretti, Jeffrey Hemmes: Chirp: a practical global filesystem for cluster and Grid computing. J. Grid Comput. 7(1): 51-72 (2009)

Andrew Blaich, Douglas Thain, Aaron Striegel: Reflections on the virtues of modularity: a case study in linux security modules. Softw., Pract. Exper. 39(15): 1235-1251 (2009)

Jeffrey Hemmes, Douglas Thain, Christian Poellabauer: Cooperative Localization in GPS-Limited Urban Environments. ADHOCNETS 2009: 422-437

Michael Lammie, Paul Brenner, Douglas Thain: Scheduling Grid workloads on multicore clusters to minimize energy and maximize performance. GRID 2009: 145-152

Li Yi, Christopher Moretti, Scott J. Emrich, Kenneth Judd, Douglas Thain: Harnessing parallelism in multicore clusters with the all-pairs and wavefront abstractions. HPDC 2009: 1-10

Ioan Raicu, Ian T. Foster, Yong Zhao, Philip Little, Christopher Moretti, Amitabh Chaudhary, Douglas Thain: The quest for scalable support of data-intensive workloads in distributed systems. HPDC 2009: 207-216

Christopher Moretti, Michael Olson, Scott J. Emrich, Douglas Thain: Highly scalable genome assembly on campus grids. SC-MTAGS 2009

Justin M. Wozniak, Paul Brenner, Douglas Thain, Aaron Striegel, Jesús A. Izaguirre: Making the best of a bad situation: Prioritized storage management in GEMS. Future Generation Comp. Syst. 24(1): 10-16 (2008)

Paul Brenner, Justin M. Wozniak, Douglas Thain, Aaron Striegel, Jeffrey W. Peng, Jesús A. Izaguirre: Biomolecular committor probability calculation enabled by processing in network storage. Parallel Computing 34(11): 652-660 (2008)

Hoang Bui, Deborah Thomas, Michael Kelly, Christopher Lyon, Douglas Thain, Patrick J. Flynn: BXGrid: A Data Repository and Workflow Abstraction for Biometrics Research. eScience 2008: 394-395

Douglas Thain, Christopher Moretti, Hoang Bui, Li Yu, Nitesh V. Chawla, Patrick J. Flynn: Using Small Abstractions to Program Large Distributed Systems. eScience 2008: 723-724

David A. Cieslak, Nitesh V. Chawla, Douglas Thain: Troubleshooting thousands of jobs on production grids using data mining techniques. GRID 2008: 217-224

Brandon Rich, Douglas Thain: DataLab: transactional data-parallel computing on an active storage cloud. HPDC 2008: 233-234

Christopher Moretti, Karsten Steinhaeuser, Douglas Thain, Nitesh V. Chawla: Scaling up Classifiers to Cloud Computers. ICDM 2008: 472-481

Nitesh V. Chawla, Douglas Thain, Ryan Lichtenwalter, David A. Cieslak: Data mining on the grid for the grid. IPDPS 2008: 1-5

Christopher Moretti, Jared Bulosan, Douglas Thain, Patrick J. Flynn: All-pairs: An abstraction for data-intensive cloud computing. IPDPS 2008: 1-11

Kyle B. Wheeler, Richard C. Murphy, Douglas Thain: Qthreads: An API for programming with millions of lightweight threads. IPDPS 2008: 1-8

Qi Liao, Andrew Blaich, Aaron Striegel, Douglas Thain: ENAVis: Enterprise Network Activities Visualization. LISA 2008: 59-74

Douglas Thain, Christopher Moretti: Efficient access to many samall files in a filesystem for grid computing. GRID 2007: 243-250

Paul Brenner, Justin M. Wozniak, Douglas Thain, Aaron Striegel, Jeffrey W. Peng, Jesús A. Izaguirre: Biomolecular Path Sampling Enabled by Processing in Network Storage. IPDPS 2007: 1-6

Christopher Moretti, Timothy C. Faltemier, Douglas Thain, Patrick J. Flynn: Challenges in Executing Data Intensive Biometric Workloads on a Desktop Grid. IPDPS 2007: 1-8

Sander Klous, Jaime Frey, Se-Chang Son, Douglas Thain, Alain Roy, Miron Livny, Jo van den Brand: Transparent access to Grid resources for user software. Concurrency and Computation: Practice and Experience 18(7): 787-801 (2006)

Douglas Thain, Todd Tannenbaum, Miron Livny: How to measure a large open-source distributed system. Concurrency and Computation: Practice and Experience 18(15): 1989-2019 (2006)

Stefano Belforte, Matthew Norman, Subir Sarkar, Igor Sfiligoi, Douglas Thain, Frank Würthwein: Using Condor Glide-Ins and Parrot to Move from Dedicated Ressources to the Grid. ARCS Workshops 2006: 285-292

Sudharshan S. Vazhkudai, Douglas Thain, Xiaosong Ma, Vincent W. Freeh: Positioning Dynamic Storage Caches for Transient Data. CLUSTER 2006

Douglas Thain: Operating System Support for Space Allocation in Grid Storage Systems. GRID 2006: 104-111

Christophe Blanchet, Rémi Mollon, Douglas Thain, Gilbert Deléage: Grid Deployment of Legacy Bioinformatics Applications with Transparent Data Access. GRID 2006: 120-127

Jeffrey Hemmes, Douglas Thain: Cacheable Decentralized Groups for Grid Resource Access Control. GRID 2006: 192-199

David A. Cieslak, Douglas Thain, Nitesh V. Chawla: Troubleshooting Distributed Systems via Data Mining. HPDC 2006: 309-312

Faruck Morcos, Thidapat Chantem, Philip Little, Tiago Gasiba, Douglas Thain: iDIBS: An Improved Distributed Backup System. ICPADS (1) 2006: 58-67

Justin M. Wozniak, Paul Brenner, Douglas Thain: Access control for a replica management database. StorageSS 2006: 41-46

Douglas Thain, Todd Tannenbaum, Miron Livny: Distributed computing in practice: the Condor experience. Concurrency - Practice and Experience 17(2-4): 323-356 (2005)

Douglas Thain, Miron Livny: Parrot: Transparent User-Level Middleware for Data-Intensive Computing. Scalable Computing: Practice and Experience 6(3) (2005)

Justin M. Wozniak, Paul Brenner, Douglas Thain, Aaron Striegel, Jesús A. Izaguirre: Generosity and gluttony in GEMS: grid enabled molecular simulations. HPDC 2005: 191-200

Douglas Thain: Identity boxing: secure user-level containment for the grid. HPDC 2005: 299-300

Douglas Thain: Identity Boxing: A New Technique for Consistent Global Identity. SC 2005: 51

Douglas Thain, Sander Klous, Justin M. Wozniak, Paul Brenner, Aaron Striegel, Jesús A. Izaguirre: Separating Abstractions from Resources in a Tactical Storage System. SC 2005: 55

Douglas Thain, Christopher Moretti, Paul Madrid, Philip Snowberger, Jeffrey Hemmes: The Consequences of Decentralized Security in a Cooperative Storage System. IEEE Security in Storage Workshop 2005: 71-82

John Bent, Douglas Thain, Andrea C. Arpaci-Dusseau, Remzi H. Arpaci-Dusseau, Miron Livny: Explicit Control in the Batch-Aware Distributed File System. NSDI 2004: 365-378

Oleg Lodygensky, Gilles Fedak, Franck Cappello, Vincent Néri, Miron Livny, Douglas Thain: XtremWeb & Condor sharing resources between Internet connected Condor pools. CCGRID 2003: 382-389

Douglas Thain, Miron Livny: The Ethernet Approach to Grid Computing. HPDC 2003: 138-151

Douglas Thain, John Bent, Andrea C. Arpaci-Dusseau, Remzi H. Arpaci-Dusseau, Miron Livny: Pipeline and Batch Sharing in Grid Workloads. HPDC 2003: 152-161

Douglas Thain, Miron Livny: Error Scope on a Computational Grid: Theory and Practice. HPDC 2002: 199-208

Miron Livny, Douglas Thain: Caveat Emptor: Making Grid Services Dependable from the Client Side. PRDC 2002: 117-120

Douglas Thain, Miron Livny: Multiple Bypass: Interposition Agents for Distributed Computing. Cluster Computing 4(1): 39-47 (2001)

Douglas Thain, Jim Basney, Se-Chang Son, Miron Livny: The Kangaroo Approach to Data Movement on the Grid. HPDC 2001: 325-333

Douglas Thain, John Bent, Andrea C. Arpaci-Dusseau, Remzi H. Arpaci-Dusseau, Miron Livny: Gathering at the well: creating communities for grid I/O. SC 2001: 58

Douglas Thain, Miron Livny: Bypass: A Tool for Building Split Execution Systems. HPDC 2000: 79-86