Jens Timmer

Rebekka Schlatter, Nicole Philippi, Gaby Wangorsch, Robert Pick, Oliver Sawodny, Christoph Borner, Jens Timmer, Michael Ederer, Thomas Dandekar: Integration of Boolean models exemplified on hepatocyte signal transduction. Briefings in Bioinformatics 13(3): 365-376 (2012)

Clemens Kreutz, J. S. Gehring, D. Lang, Ralf Reski, Jens Timmer, Stefan A. Rensing: TSSi - an R package for transcription start site identification from 5′ mRNA tag data. Bioinformatics 28(12): 1641-1642 (2012)

M. Schelker, A. Raue, Jens Timmer, Clemens Kreutz: Comprehensive estimation of input signals and dynamics in biochemical reaction networks. Bioinformatics 28(18): 529-534 (2012)

Matthias Ihle, Hinnerk Feldwisch-Drentrup, César A. Teixeira, Adrien Witon, Björn Schelter, Jens Timmer, Andreas Schulze-Bonhage: EPILEPSIAE - A European epilepsy database. Computer Methods and Programs in Biomedicine 106(3): 127-138 (2012)

Dirk-Bart den Ouden, Dorothee Saur, Wolfgang Mader, Björn Schelter, Sladjana Lukic, Eisha Wali, Jens Timmer, Cynthia K. Thompson: Network modulation during complex syntactic processing. NeuroImage 59(1): 815-823 (2012)

Dorothee Saur, Björn Schelter, Susanne Schnell, David Kratochvil, Hanna Küpper, Philipp Kellmeyer, Dorothee Kümmerer, Stefan Klöppel, Volkmar Glauche, Rüdiger Lange, Wolfgang Mader, David Feess, Jens Timmer, Cornelius Weiller: Combining functional and anatomical connectivity reveals brain networks for auditory language comprehension. NeuroImage 49(4): 3187-3197 (2010)

A. Raue, Clemens Kreutz, Thomas Maiwald, J. Bachmann, M. Schilling, Ursula Klingmüller, Jens Timmer: Structural and practical identifiability analysis of partially observed dynamical models by exploiting the profile likelihood. Bioinformatics 25(15): 1923-1929 (2009)

Enno Mammen, Swagata Nandi, Thomas Maiwald, Jens Timmer: Effect of Jump Discontinuity for Phase-Randomized Surrogate Data Testing. I. J. Bifurcation and Chaos 19(1): 403-408 (2009)

Kilian Bartholomé, Clemens Kreutz, Jens Timmer: Estimation of Gene Induction Enables a Relevance-Based Ranking of Gene Sets. Journal of Computational Biology 16(7): 959-967 (2009)

Kilian Bartholomé, Jens Timmer: Regulatorische Prinzipien und Systemanalyse der bakteriellen Chemotaxis (Regulatory Principles and Systems Analysis of Bacterial Chemotaxis). Automatisierungstechnik 56(5): 241-249 (2008)

Thomas Maiwald, Jens Timmer: Dynamical modeling and multi-experiment fitting with PottersWheel. Bioinformatics 24(18): 2037-2043 (2008)

Wolfgang Mader, David Feess, Rüdiger Lange, Dorothee Saur, Volkmar Glauche, Cornelius Weiller, Jens Timmer, Björn Schelter: On the Detection of Direct Directed Information Flow in fMRI. J. Sel. Topics Signal Processing 2(6): 965-974 (2008)

S. Hengl, Clemens Kreutz, Jens Timmer, Thomas Maiwald: Data-based identifiability analysis of non-linear dynamical models. Bioinformatics 23(19): 2612-2618 (2007)

Clemens Kreutz, M. M. Bartolome Rodriguez, Thomas Maiwald, M. Seidl, H. E. Blum, L. Mohr, Jens Timmer: An error model for protein quantification. Bioinformatics 23(20): 2747-2753 (2007)

Björn Schelter, Matthias Winterhalder, Jens Timmer, Jürgen Kurths: Phase Synchronization and Coherence Analysis: Sensitivity and specificity. I. J. Bifurcation and Chaos 17(10): 3551-3556 (2007)

Matthias Winterhalder, Björn Schelter, Jens Timmer: Detecting Coupling Directions in Multivariate Oscillatory Systems. I. J. Bifurcation and Chaos 17(10): 3735-3739 (2007)

Valko Petrov, Martin Peifer, Jens Timmer: Bistability and Self-oscillations in Cell Cycle Control. I. J. Bifurcation and Chaos 16(4): 1057-1066 (2006)

Matthias Winterhalder, Björn Schelter, Wolfram Hesse, Karin Schwab, Lutz Leistritz, Daniel Klan, Reinhard Bauer, Jens Timmer, Herbert Witte: Comparison of linear signal processing techniques to infer directed interactions in multivariate neural systems. Signal Processing 85(11): 2137-2160 (2005)

Henning U. Voss, Jens Timmer, Jürgen Kurths: Nonlinear Dynamical System Identification from Uncertain and Indirect Measurements. I. J. Bifurcation and Chaos 14(6): 1905-1933 (2004)

T. G. Müller, Jens Timmer: Parameter Identification Techniques for Partial Differential Equations. I. J. Bifurcation and Chaos 14(6): 2053-2060 (2004)

Jens Timmer, T. G. Müller, I. Swameye, O. Sandra, Ursula Klingmüller: Modeling the Nonlinear Dynamics of Cellular Signal Transduction. I. J. Bifurcation and Chaos 14(6): 2069-2079 (2004)

D. Maraun, Werner Horbelt, H. Rust, Jens Timmer, H. P. Happersberger, F. Drepper: Identification of Rate Constants and nonobservable Absorption Spectra in Nonlinear Biochemical Reaction Dynamics. I. J. Bifurcation and Chaos 14(6): 2081-2092 (2004)

Marco Thiel, M. Carmen Romano, Udo Schwarz, Jürgen Kurths, Jens Timmer: Surrogate-Based Hypothesis Test without Surrogates. I. J. Bifurcation and Chaos 14(6): 2107-2114 (2004)

Daniel Faller, Thomas Reinheckel, Daniel Wenzler, Sascha Hagemann, Ke Xiao, Josef Honerkamp, Christoph Peters, Thomas Dandekar, Jens Timmer: An Open Source Protein Gel Documentation System for Proteome Analyses. Journal of Chemical Information and Modeling 44(1): 168-169 (2004)

Daniel Faller, Henning U. Voss, Jens Timmer, Uwe Hobohm: Normalization of DNA-Microarray Data by Nonlinear Correlation Maximization. Journal of Computational Biology 10(5): 751-762 (2003)

Daniel Faller, Ursula Klingmüller, Jens Timmer: Simulation Methods for Optimal Experimental Design in Systems Biology. Simulation 79(12): 717-725 (2003)

Steffen Michalek, Mirko Wagner, Jens Timmer: A new approximate likelihood estimator for ARMA-filtered hidden Markov models. IEEE Transactions on Signal Processing 48(6): 1537-1547 (2000)

Thorsten Müller, T. Ball, R. Kristeva-Feige, Thomas Mergner, Jens Timmer: Classification of Electro-encephalographic Spatial Patterns. ISMDA 2000: 55-60

Holger Steltner, Richard Staats, Michael Vogel, Christian Virchow, Heinrich Matthys, Josef Guttmann, Jens Timmer: Detection and Classification of Sleep-Disordered Breathing Using Acoustic Respiratory Input Impedance and Nasal Pressure. ISMDA 2000: 61-66

Werner Horbelt, Thorsten Müller, Jens Timmer, Werner Melzer, Karl Winkler: Analysis of Nonlinear Differential Equations: Parameter Estimation and Model Selection. ISMDA 2000: 152-158

S. Reisch, Holger Steltner, Jens Timmer, Christine Renotte, Josef Guttmann: Early detection of upper airway obstructions by analysis of acoustical respiratory input impedance. Biological Cybernetics 81(1): 25-37 (1999)

Steffen Michalek, Jens Timmer: Estimating rate constants in hidden Markov models by the EM algorithm. IEEE Transactions on Signal Processing 47(1): 226-228 (1999)

Stefan Gezeck, Jens Timmer: Detecting multimodality in saccadic reaction time distributions in gap and overlap tasks. Biological Cybernetics 78(4): 293-305 (1998)

Jens Timmer, M. Lauk, W. Pfleger, Günther Deuschl: Cross-spectral analysis of physiological tremor and muscle activity. Biological Cybernetics 78(5): 349-357 (1998)

Jens Timmer, M. Lauk, W. Pfleger, Günther Deuschl: Cross-spectral analysis of physiological tremor and muscle activity. Biological Cybernetics 78(5): 359-368 (1998)

Jens Timmer, Andreas S. Weigend: Modeling Volatility Using State Space Models. Int. J. Neural Syst. 8(4): 385-398 (1997)

Jens Timmer, C. Gantert, Günther Deuschl, Josef Honerkamp: Characteristics of hand tremor time series. Biological Cybernetics 70(1): 75-80 (1993)

C. Gantert, Josef Honerkamp, Jens Timmer: Analyzing the dynamics of hand tremor time series. Biological Cybernetics 66(6): 479-484 (1992)