Weida Tong

Halil Bisgin, Zhichao Liu, Reagan Kelly, Hong Fang, Xiaowei Xu, Weida Tong: Investigating drug repositioning opportunities in FDA drug labels through topic modeling. BMC Bioinformatics 13(S-15): S6 (2012)

Halil Bisgin, Zhichao Liu, Hong Fang, Xiaowei Xu, Weida Tong: Mining FDA drug labels using an unsupervised learning technique - topic modeling. BMC Bioinformatics 12(S-10): S11 (2011)

Minjun Chen, Leming M. Shi, Reagan Kelly, Roger Perkins, Hong Fang, Weida Tong: Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project. BMC Bioinformatics 12(S-10): S3 (2011)

Venkata Swamy Martha, Zhichao Liu, Li Guo, Zhenqiang Su, Yanbin Ye, Hong Fang, Don Ding, Weida Tong, Xiaowei Xu: Constructing a robust protein-protein interaction network by integrating multiple public databases. BMC Bioinformatics 12(S-10): S7 (2011)

Zhichao Liu, Qiang Shi, Don Ding, Reagan Kelly, Hong Fang, Weida Tong: Translating Clinical Findings into Knowledge in Drug Safety Evaluation - Drug Induced Liver Injury Prediction System (DILIps). PLoS Computational Biology 7(12) (2011)

Zhining Wen, Zhenqiang Su, Jie Liu, Baitang Ning, Lei Guo, Weida Tong, Leming M. Shi: The MicroArray Quality Control (MAQC) Project and Cross-Platform Analysis of Microarray Data. Handbook of Statistical Bioinformatics 2011: 171-192

Philippe Rocca-Serra, Marco Brandizi, Eamonn Maguire, Nataliya Sklyar, Chris F. Taylor, Kimberly Begley, Dawn Field, Stephen C. Harris, Winston Hide, Oliver Hofmann, Steffen Neumann, Peter Sterk, Weida Tong, Susanna-Assunta Sansone: ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics 26(18): 2354-2356 (2010)

Zhining Wen, Charles Wang, Quan Shi, Ying Huang, Zhenqiang Su, Huixiao Hong, Weida Tong, Leming Shi: Evaluation of gene expression data generated from expired Affymetrix GeneChip^® microarrays using MAQC reference RNA samples. BMC Bioinformatics 11(S-6): S10 (2010)

Hong Fang, Joshua Xu, Don Ding, Scott A. Jackson, Isha R. Patel, Jonathan G. Frye, Wen Zou, Rajesh Nayak, Steven Foley, James J. Chen, Zhenqiang Su, Yanbin Ye, Steve Turner, Steve Harris, Guangxu Zhou, Carl Cerniglia, Weida Tong: An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays. BMC Bioinformatics 11(S-6): S4 (2010)

Don Ding, Lei Xu, Hong Fang, Huixiao Hong, Roger Perkins, Steve Harris, Edward D. Bearden, Leming Shi, Weida Tong: The EDKB: an established knowledge base for endocrine disrupting chemicals. BMC Bioinformatics 11(S-6): S5 (2010)

Joshua Xu, Carolyn Wise, Vijayalakshmi Varma, Hong Fang, Baitang Ning, Huixiao Hong, Weida Tong, Jim Kaput: Two new ArrayTrack libraries for personalized biomedical research. BMC Bioinformatics 11(S-6): S6 (2010)

Huixiao Hong, Qilong Hong, Roger Perkins, Leming M. Shi, Hong Fang, Zhenqiang Su, Yvonne P. Dragan, James C. Fuscoe, Weida Tong: The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments. Journal of Computational Biology 16(12): 1671-1688 (2009)

Huixiao Hong, Qilong Hong, Weida Tong: Accurate Prediction and Recognition of Subfamilies of G Protein-Coupled Receptors from Amino Acid Sequences. BIOCOMP 2009: 3-9

Huixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong: Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples. BMC Bioinformatics 9(S-9) (2008)

Zhenqiang Su, Huixiao Hong, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong: Very Important Pool (VIP) genes - an application for microarray-based molecular signatures. BMC Bioinformatics 9(S-9) (2008)

Zhenqiang Su, Huixiao Hong, Roger Perkins, Xueguang Shao, Wensheng Cai, Weida Tong: Consensus analysis of multiple classifiers using non-repetitive variables: Diagnostic application to microarray gene expression data. Computational Biology and Chemistry 31(1): 48-56 (2007)

Yongxi Tan, Leming M. Shi, Saber M. Hussain, Jun Xu, Weida Tong, John M. Frazier, Charles Wang: Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium. Bioinformatics 22(1): 77-87 (2006)

Lei Guo, Hong Fang, Jim Collins, Xiao-hui Fan, Stacey L. Dial, Alex Wong, Kshama Mehta, Ernice Blann, Leming M. Shi, Weida Tong, Yvonne P. Dragan: Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists. BMC Bioinformatics 7(S-2) (2006)

Tao Han, Jianyong Wang, Weida Tong, Martha M. Moore, James C. Fuscoe, Tao Chen: Microarray analysis distinguishes differential gene expression patterns from large and small colony Thymidine kinase mutants of L5178Y mouse lymphoma cells. BMC Bioinformatics 7(S-2) (2006)

Hongmei Sun, Hong Fang, Tao Chen, Roger Perkins, Weida Tong: GOFFA: Gene Ontology For Functional Analysis - A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data. BMC Bioinformatics 7(S-2) (2006)

Hong Fang, Weida Tong, Roger Perkins, Leming M. Shi, Huixiao Hong, X. Cao, Qian Xie, S. H. Yim, J. M. Ward, Henry C. Pitot, Yvonne P. Dragan: Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling. BMC Bioinformatics 6(S-2) (2005)

Huixiao Hong, Yvonne P. Dragan, Joshua Epstein, Candee Teitel, Bangzheng Chen, Qian Xie, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong: Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS). BMC Bioinformatics 6(S-2) (2005)

Leming M. Shi, Weida Tong, Hong Fang, Uwe Scherf, Jing Han, Raj K. Puri, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, Zhenqiang Su, Tao Han, James C. Fuscoe, Z. Alex Xu, Tucker A. Patterson, Huixiao Hong, Qian Xie, Roger Perkins, James J. Chen, Daniel A. Casciano: Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential. BMC Bioinformatics 6(S-2) (2005)

Leming M. Shi, Weida Tong, Zhenqiang Su, Tao Han, Jing Han, Raj K. Puri, Hong Fang, Felix W. Frueh, Federico M. Goodsaid, Lei Guo, William S. Branham, James J. Chen, Z. Alex Xu, Stephen C. Harris, Huixiao Hong, Qian Xie, Roger Perkins, James C. Fuscoe: Microarray scanner calibration curves: characteristics and implications. BMC Bioinformatics 6(S-2) (2005)

Qian Xie, Luke D. Ratnasinghe, Huixiao Hong, Roger Perkins, Ze-Zhong Tang, Nan Hu, Philip R. Taylor, Weida Tong: Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method. BMC Bioinformatics 6(S-2) (2005)

Yongxi Tan, Leming M. Shi, Weida Tong, G. T. Gene Hwang, Charles Wang: Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models. Computational Biology and Chemistry 28(3): 235-243 (2004)

Weida Tong, Huixiao Hong, Hong Fang, Qian Xie, Roger Perkins: Decision Forest: Combining the Predictions of Multiple Independent Decision Tree Models. Journal of Chemical Information and Computer Sciences 43(2): 525-531 (2003)

Yiyu Cheng, Minjun Chen, Weida Tong: An Approach to Comparative Analysis of Chromatographic Fingerprints for Assuring the Quality of Botanical Drugs. Journal of Chemical Information and Computer Sciences 43(3): 1068-1076 (2003)

Leming M. Shi, Hong Fang, Weida Tong, Jie Wu, Roger Perkins, Robert M. Blair, William S. Branham, Stacey L. Dial, Carrie L. Moland, Daniel M. Sheehan: QSAR Models Using a Large Diverse Set of Estrogens. Journal of Chemical Information and Computer Sciences 41(1): 186-195 (2001)

Weida Tong, David R. Lowis, Roger Perkins, Yu Chen, William J. Welsh, Dean W. Goddette, Trevor W. Heritage, Daniel M. Sheehan: Evaluation of Quantitative Structure-Activity Relationship Methods for Large-Scale Prediction of Chemicals Binding to the Estrogen Receptor. Journal of Chemical Information and Computer Sciences 38(4): 669-677 (1998)

Weida Tong, Valerian T. D'Souza: The Role of the Carboxylate Ion in Models of Acyl-Chymotrypsin. Journal of Computational Chemistry 16(6): 705-714 (1995)