Tetsuro Toyoda

Shuji Kawaguchi, Kei Iida, Erimi Harada, Kousuke Hanada, Akihiro Matsui, Masanori Okamoto, Kazuo Shinozaki, Motoaki Seki, Tetsuro Toyoda: Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads. Bioinformatics 28(7): 929-937 (2012)

Hiroshi Masuya, Yuko Makita, Norio Kobayashi, Koro Nishikata, Yuko Yoshida, Yoshiki Mochizuki, Koji Doi, Terue Takatsuki, Kazunori Waki, Nobuhiko Tanaka, Manabu Ishii, Akihiro Matsushima, Satoshi Takahashi, Atsushi Hijikata, Kouji Kozaki, Teiichi Furuichi, Hideya Kawaji, Shigeharu Wakana, Yukio Nakamura, Atsushi Yoshiki, Takehide Murata, Kaoru Fukami-Kobayashi, S. Sujatha Mohan, Osamu Ohara, Yoshihide Hayashizaki, Riichiro Mizoguchi, Yuichi Obata, Tetsuro Toyoda: The RIKEN integrated database of mammals. Nucleic Acids Research 39(Database-Issue): 861-870 (2011)

Norio Kobayashi, Manabu Ishii, Satoshi Takahashi, Yoshiki Mochizuki, Akihiro Matsushima, Tetsuro Toyoda: Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases. Nucleic Acids Research 39(Web-Server-Issue): 533-540 (2011)

Kousuke Hanada, Kenji Akiyama, Tetsuya Sakurai, Tetsuro Toyoda, Kazuo Shinozaki, Shin-Han Shiu: sORF finder: a program package to identify small open reading frames with high coding potential. Bioinformatics 26(3): 399-400 (2010)

Akihiro Matsushima, Norio Kobayashi, Yoshiki Mochizuki, Manabu Ishii, Shuji Kawaguchi, Takaho A. Endo, Ryo Umetsu, Yuko Makita, Tetsuro Toyoda: OmicBrowse: a Flash-based high-performance graphics interface for genomic resources. Nucleic Acids Research 37(Web-Server-Issue): 57-62 (2009)

Yuko Yoshida, Yuko Makita, Naohiko Heida, Satomi Asano, Akihiro Matsushima, Manabu Ishii, Yoshiki Mochizuki, Hiroshi Masuya, Shigeharu Wakana, Norio Kobayashi, Tetsuro Toyoda: PosMed (Positional Medline): prioritizing genes with an artificial neural network comprising medical documents to accelerate positional cloning. Nucleic Acids Research 37(Web-Server-Issue): 147-152 (2009)

Norio Kobayashi, Tetsuro Toyoda: Statistical search on the Semantic Web. Bioinformatics 24(7): 1002-1010 (2008)

Eli Kaminuma, Hiroshi Masuya, Ikuo Miura, Hiromi Motegi, Kenzi R. Takahasi, Miki Nakazawa, Minami Matsui, Yoichi Gondo, Tetsuo Noda, Toshihiko Shiroishi, Shigeharu Wakana, Tetsuro Toyoda: Objective Evaluation Measures of Genetic Marker Selection in Large-Scale SNP genotyping. J. Bioinformatics and Computational Biology 6(5): 905-917 (2008)

Tetsuro Toyoda, Yoshiki Mochizuki, Keith Player, Naohiko Heida, Norio Kobayashi, Yoshiyuki Sakaki: OmicBrowse: a browser of multidimensional omics annotations. Bioinformatics 23(4): 524-526 (2007)

Hiroshi Masuya, Sumi Yoshikawa, Naohiko Heida, Tetsuro Toyoda, Shigeharu Wakana, Toshihiko Shiroishi: Phenosite: a Web Database Integrating the mouse phenotyping Platform and the Experimental Procedures in mice. J. Bioinformatics and Computational Biology 5(6): 1173-1191 (2007)

Eli Kaminuma, Naohiko Heida, Takeshi Yoshizumi, Miki Nakazawa, Minami Matsui, Tetsuro Toyoda: Erratum: "In Silico Phenotypic Screening Method of Mutants Based on Statistical Modeling of Genetically Mixed Samples". J. Bioinformatics and Computational Biology 4(1): 169 (2006)

Eli Kaminuma, Naohiko Heida, Yuko Tsumoto, Miki Nakazawa, Nobuharu Goto, Akihiko Konagaya, Minami Matsui, Tetsuro Toyoda: Three-dimensional Definition of Leaf Morphological Traits of arabidopsis in Silico Phenotypic Analysis. J. Bioinformatics and Computational Biology 3(2): 401-414 (2005)

Eli Kaminuma, Naohiko Heida, Takeshi Yoshizumi, Miki Nakazawa, Minami Matsui, Tetsuro Toyoda: in Silico Phenotypic Screening Method of Mutants Based on Statistical Modeling of Genetically Mixed Samples. J. Bioinformatics and Computational Biology 3(6): 1281-1294 (2005)

Tetsuya Sakurai, Masakazu Satou, Kenji Akiyama, Kei Iida, Motoaki Seki, Takashi Kuromori, Takuya Ito, Akihiko Konagaya, Tetsuro Toyoda, Kazuo Shinozaki: RARGE: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome. Nucleic Acids Research 33(Database-Issue): 647-650 (2005)

Tetsuro Toyoda, Akiyoshi Wada: Omic space: coordinate-based integration and analysis of genomic phenomic interactions. Bioinformatics 20(11): 1759-1765 (2004)

Tetsuro Toyoda, Akihiko Konagaya: KnowledgeEditor: a new tool for interactive modeling and analyzing biological pathways based on microarray data. Bioinformatics 19(3): 433-434 (2003)

Tetsuro Toyoda, Yoshiki Mochizuki, Akihiko Konagaya: GSCope: a clipped fisheye viewer effective for highly complicated biomolecular network graphs. Bioinformatics 19(3): 437-438 (2003)