Adelinde M. Uhrmacher

Martin Luboschik, Carsten Maus, Hans-Jörg Schulz, Heidrun Schumann, Adelinde Uhrmacher: Heterogeneity-based guidance for exploring multiscale data in systems biology. BioVis 2012: 33-40

Stefan Rybacki, Stefan Leye, Jan Himmelspach, Adelinde M. Uhrmacher: Template and Frame Based Experiment Workflows in Modeling and Simulation Software with WORMS. SERVICES 2012: 25-32

Martin Luboschik, Christian Tominski, Arne T. Bittig, Adelinde M. Uhrmacher, Heidrun Schumann: Towards Interactive Visual Analysis of Microscopic-Level Simulation Data. SIGRAD 2012: 91-94

Simon J. E. Taylor, Richard Fujimoto, Ernest H. Page, Paul A. Fishwick, Adelinde M. Uhrmacher, Gabriel A. Wainer: Panel on grand challenges for modeling and simulation. Winter Simulation Conference 2012: 232

Alexander Steiniger, Frank Krüger, Adelinde M. Uhrmacher: Modeling agents and their environment in multi-level-DEVS. Winter Simulation Conference 2012: 233

Stefan Leye, Adelinde M. Uhrmacher: GUISE - a tool for GUIding simulation experiments. Winter Simulation Conference 2012: 305

Adelinde M. Uhrmacher: Seven pitfalls in modeling and simulation research. Winter Simulation Conference 2012: 318

Arne T. Bittig, Adelinde M. Uhrmacher, Claudia Matschegewski, J. Barbara Nebe: Spatial simulation of actin filament dynamics on structured surfaces. Winter Simulation Conference 2012: 364

Sebastian Nähring, Carsten Maus, Roland Ewald, Adelinde M. Uhrmacher: Automated transformation between modeling languages with different expressiveness: challenges and results from a use case with SBML and ML-Rules. Winter Simulation Conference 2012: 371

Roland Ewald, Adelinde M. Uhrmacher: Setting up simulation experiments with SESSL. Winter Simulation Conference 2012: 379

Stefan Leye, Adelinde M. Uhrmacher: GUISE - a tool for GUIding simulation experiments. Winter Simulation Conference 2012: 385

Tobias Helms, Stefan Rybacki, Roland Ewald, Adelinde M. Uhrmacher: An adaptive simulator for ML-rules. Winter Simulation Conference 2012: 390

Johannes Schützel, Jan Himmelspach, Holger Meyer, Andreas Heuer, Adelinde M. Uhrmacher: Streaming data management for the online processing of simulation data. Winter Simulation Conference 2012: 397

Tobias Helms, Jan Himmelspach, Carsten Maus, Oliver Röwer, Johannes Schützel, Adelinde M. Uhrmacher: Toward a language for the flexible observation of simulations. Winter Simulation Conference 2012: 418

Martin Luboschik, Stefan Rybacki, Roland Ewald, Benjamin Schwarze, Heidrun Schumann, Adelinde M. Uhrmacher: Interactive visual exploration of simulator accuracy: a case study for Stochastic Simulation Algorithms. Winter Simulation Conference 2012: 419

Oliver Rose, Adelinde M. Uhrmacher (Eds.): Winter Simulation Conference, WSC '12, Berlin, Germany, December 9-12, 2012. WSC 2012

Matthias Jeschke, Roland Ewald, Adelinde M. Uhrmacher: Exploring the performance of spatial stochastic simulation algorithms. J. Comput. Physics 230(7): 2562-2574 (2011)

Monika Heiner, Adelinde Uhrmacher: Foundations of formal reconstruction of biochemical networks. Theor. Comput. Sci. 412(26): 2798-2799 (2011)

Arne T. Bittig, Fiete Haack, Carsten Maus, Adelinde M. Uhrmacher: Adapting rule-based model descriptions for simulating in continuous and hybrid space. CMSB 2011: 161-170

Hans-Jörg Schulz, Adelinde M. Uhrmacher, Heidrun Schumann: Visual analytics for stochastic simulation in cell biology. I-KNOW 2011: 48

Stefan Rybacki, Jan Himmelspach, Fiete Haack, Adelinde M. Uhrmacher: WorMS- a framework to support workflows in M&S. Winter Simulation Conference 2011: 716-727

Rainer Breitling, Frank J. Bruggeman, Corrado Priami, Adelinde M. Uhrmacher: Formal Methods in Molecular Biology (Dagstuhl Seminar 11151). Dagstuhl Reports 1(4): 41-64 (2011)

Jan Himmelspach, Mathias Röhl, Adelinde M. Uhrmacher: Component-Based Models and Simulations for Supporting Valid Multi-Agent System Simulations. Applied Artificial Intelligence 24(5): 414-442 (2010)

Roland Ewald, Jan Himmelspach, Matthias Jeschke, Stefan Leye, Adelinde M. Uhrmacher: Flexible experimentation in the modeling and simulation framework JAMES II - implications for computational systems biology. Briefings in Bioinformatics 11(3): 290-300 (2010)

Mathias John, Cédric Lhoussaine, Joachim Niehren, Adelinde M. Uhrmacher: The Attributed Pi-Calculus with Priorities. T. Comp. Sys. Biology 12: 13-76 (2010)

Roland Ewald, Rene Schulz, Adelinde M. Uhrmacher: Selecting Simulation Algorithm Portfolios by Genetic Algorithms. PADS 2010: 48-56

Stefan Leye, Mathias John, Adelinde M. Uhrmacher: A flexible architecture for performance experiments with the pi-Calculus and its extensions. SimuTools 2010: 35

Stefan Leye, Adelinde M. Uhrmacher: A flexible and extensible architecture for experimental model validation. SimuTools 2010: 65

Sabine Zinn, Jutta Gampe, Jan Himmelspach, Adelinde M. Uhrmacher: A DEVS model for demographic microsimulation. SpringSim 2010: 146

Alexander Steiniger, Adelinde M. Uhrmacher: Modeling and simulation for user assistance in smart environments. Winter Simulation Conference 2010: 490-499

Stefan Rybacki, Jan Himmelspach, Enrico Seib, Adelinde M. Uhrmacher: Using workflows in M&S software. Winter Simulation Conference 2010: 535-545

Arne T. Bittig, Adelinde M. Uhrmacher: Spatial modeling in cell biology at multiple levels. Winter Simulation Conference 2010: 608-619

Fiete Haack, Stefan Leye, Adelinde M. Uhrmacher: A flexible architecture for modeling and simulation of diffusional association. FBTC 2010: 70-84

L. Felipe Perrone, Giovanni Stea, Jason Liu, Adelinde Uhrmacher, Manuel Villén-Altamirano (Eds.): 3rd International Conference on Simulation Tools and Techniques, SIMUTools '10, Malaga, Spain - March 16 - 18, 2010. ICST/ACM 2010, isbn 978-963-9799-87-5

Corrado Priami, Rainer Breitling, David Gilbert, Monika Heiner, Adelinde M. Uhrmacher (Eds.): Transactions on Computational Systems Biology XII, Special Issue on Modeling Methodologies. Lecture Notes in Computer Science 5945, Springer 2010, isbn 978-3-642-11711-4

Florian Marquardt, Adelinde M. Uhrmacher: An AI-Planning based Service Composition Architecture for Ambient Intelligence. Intelligent Environments (Workshops) 2009: 145-152

Roland Ewald, Stefan Leye, Adelinde M. Uhrmacher: An Efficient and Adaptive Mechanism for Parallel Simulation Replication. PADS 2009: 104-113

Roland Ewald, Adelinde M. Uhrmacher, Kaustav Saha: Data mining for simulation algorithm selection. SimuTools 2009: 14

Bing Wang, Jan Himmelspach, Roland Ewald, Yiping Yao, Adelinde M. Uhrmacher: An experimental analysis environment for logical process simulation algorithms. SimuTools 2009: 40

Stefan Leye, Jan Himmelspach, Adelinde M. Uhrmacher: A Discussion on Experimental Model Validation. UKSim 2009: 161-167

Adelinde M. Uhrmacher, Hans-Jörg Schulz, Heidrun Schumann, Lars Schwabe, Dirk Timmermann: Regenerative systems: challenges and opportunities for modeling, simulation, and visualization. VALUETOOLS 2009: 45

Orianne Mazemondet, Mathias John, Carsten Maus, Adelinde M. Uhrmacher, Arndt Rolfs: Integrating Diverse Reaction Types into Stochastic Models - A Signaling Pathway Case Study in the Imperative pi-Calculus. Winter Simulation Conference 2009: 932-943

Sabine Zinn, Jan Himmelspach, Jutta Gampe, Adelinde M. Uhrmacher: MIC-core: A Tool for Microsimulation. Winter Simulation Conference 2009: 992-1002

Roland Ewald, Adelinde M. Uhrmacher: Automating the Runtime Performance Evaluation of Simulation Algorithms. Winter Simulation Conference 2009: 1079-1091

Bing Wang, Jan Himmelspach, Roland Ewald, Yiping Yao, Adelinde M. Uhrmacher: Experimental Analysis of Logical Process Simulation Algorithms in JAMES II. Winter Simulation Conference 2009: 1167-1179

Christina Bohk, Roland Ewald, Adelinde M. Uhrmacher: Probabilistic Population Projection with JAMES II. Winter Simulation Conference 2009: 2008-2019

Mathias John, Roland Ewald, Adelinde M. Uhrmacher: A Spatial Extension to the pi Calculus. Electr. Notes Theor. Comput. Sci. 194(3): 133-148 (2008)

Dan Chen, Roland Ewald, Georgios K. Theodoropoulos, Rob Minson, Ton Oguara, Michael Lees, Brian S. Logan, Adelinde M. Uhrmacher: Data access in distributed simulations of multi-agent systems. Journal of Systems and Software 81(12): 2345-2360 (2008)

Matthias Jeschke, Roland Ewald, Alfred Park, Richard Fujimoto, Adelinde M. Uhrmacher: A parallel and distributed discrete event approach for spatial cell-biological simulations. SIGMETRICS Performance Evaluation Review 35(4): 22-31 (2008)

Mathias John, Cédric Lhoussaine, Joachim Niehren, Adelinde M. Uhrmacher: The Attributed Pi Calculus. CMSB 2008: 83-102

Stefan Leye, Jan Himmelspach, Matthias Jeschke, Roland Ewald, Adelinde M. Uhrmacher: A Grid-Inspired Mechanism for Coarse-Grained Experiment Execution. DS-RT 2008: 7-16

Stefan Leye, Adelinde M. Uhrmacher, Corrado Priami: A Bounded-Optimistic, Parallel Beta-Binders Simulator. DS-RT 2008: 139-148

Adelinde M. Uhrmacher, Jan Himmelspach, Matthias Jeschke, Mathias John, Stefan Leye, Carsten Maus, Mathias Röhl, Roland Ewald: One Modelling Formalism & Simulator Is Not Enough! A Perspective for Computational Biology Based on James II. FMSB 2008: 123-138

Friederike Klan, Mathias Röhl, Birgitta König-Ries, Adelinde M. Uhrmacher: Using context information to evaluate cooperativeness. Q2SWinet 2008: 98-105

Florian Marquardt, Adelinde M. Uhrmacher: Evaluating AI planning for service composition in smart environments. MUM 2008: 48-55

Christiane Reisse, Christoph Burghardt, Florian Marquardt, Thomas Kirste, Adelinde Uhrmacher: Smart environments meet the semantic web. MUM 2008: 88-91

Matthias Jeschke, Alfred Park, Roland Ewald, Richard Fujimoto, Adelinde M. Uhrmacher: Parallel and Distributed Spatial Simulation of Chemical Reactions. PADS 2008: 51-59

Roland Ewald, Jan Himmelspach, Adelinde M. Uhrmacher: An Algorithm Selection Approach for Simulation Systems. PADS 2008: 91-98

Carsten Maus, Mathias John, Mathias Röhl, Adelinde M. Uhrmacher: Hierarchical Modeling for Computational Biology. SFM 2008: 81-124

Jan Himmelspach, Roland Ewald, Adelinde M. Uhrmacher: A flexible and scalable experimentation layer. Winter Simulation Conference 2008: 827-835

Roland Ewald, Johannes Rossel, Jan Himmelspach, Adelinde M. Uhrmacher: A plug-in-based architecture for random number generation in simulation systems. Winter Simulation Conference 2008: 836-844

Mathias Röhl, Adelinde M. Uhrmacher: Definition and analysis of composition structures for discrete-event models. Winter Simulation Conference 2008: 942-950

Matthias Jeschke, Adelinde M. Uhrmacher: Multi-resolution spatial simulation for molecular crowding. Winter Simulation Conference 2008: 1384-1392

Monika Heiner, Adelinde M. Uhrmacher (Eds.): Computational Methods in Systems Biology, 6th International Conference, CMSB 2008, Rostock, Germany, October 12-15, 2008. Proceedings. Lecture Notes in Computer Science 5307, Springer 2008, isbn 978-3-540-88561-0

Alexander Helleboogh, Giuseppe Vizzari, Adelinde Uhrmacher, Fabien Michel: Modeling dynamic environments in multi-agent simulation. Autonomous Agents and Multi-Agent Systems 14(1): 87-116 (2007)

Adelinde M. Uhrmacher, Arndt Rolfs, Jana Frahm: DFG Research Training Group 1387/1: dIEM oSiRiS - Integrative Development of Modelling and Simulation Methods for Regenerative Systems (DFG Graduiertenkolleg 1387/1: dIEM oSiRiS - Die integrative Entwicklung von Modellierungs- und Simulationsmethoden für regenerative Systeme). it - Information Technology 49(6): 388-395 (2007)

Jan Himmelspach, Adelinde M. Uhrmacher: Plug'n Simulate. Annual Simulation Symposium 2007: 137-143

Mathias Röhl, Adelinde M. Uhrmacher, Birgitta König-Ries: An Experimental Frame for Evaluating Service Trading Overlays in Mobile ad-hoc Networks. MMS 2007: 37-48

Jan Himmelspach, Roland Ewald, Stefan Leye, Adelinde M. Uhrmacher: Parallel and distributed simulation of parallel DEVS models. SpringSim (2) 2007: 249-256

Mathias Röhl, Florian Marquardt, Adelinde M. Uhrmacher: Exploiting web service techniques for composing simulation models. Winter Simulation Conference 2007: 833-841

Adelinde M. Uhrmacher, Roland Ewald, Mathias John, Carsten Maus, Matthias Jeschke, Susanne Biermann: Combining micro and macro-modeling in DEVS for computational biology. Winter Simulation Conference 2007: 871-880

Andrea Unger, Susanne Biermann, Mathias John, Adelinde Uhrmacher, Heidrun Schumann: Visual support for modeling and simulation of cell biological systems. Winter Simulation Conference 2007: 2378

Adelinde Uhrmacher, Céline Kuttler: Multi-Level Modeling in Systems Biology by Discrete Event Approaches (Mehrebenen-Modellierung in der Systembiologie innerhalb diskret-ereignisbasierter Ansätze). it - Information Technology 48(3): 148-153 (2006)

Grégory Batt, Jeremy T. Bradley, Roland Ewald, François Fages, Holger Hermanns, Jane Hillston, Peter Kemper, Alke Martens, Pieter J. Mosterman, Flemming Nielson, Oleg Sokolsky, Adelinde M. Uhrmacher: 06161 Working Groups' Report: The Challlenge of Combining Simulation and Verification. Simulation and Verification of Dynamic Systems 2006

David M. Nicol, Corrado Priami, Hanne Riis Nielson, Adelinde M. Uhrmacher: 06161 Abstracts Collection -- Simulation and Verification of Dynamic Systems. Simulation and Verification of Dynamic Systems 2006

Hanne Riis Nielson, David M. Nicol, Corrado Priami, Adelinde M. Uhrmacher: 06161 Executive Summary -- Simulation and Verification of Dynamic Systems. Simulation and Verification of Dynamic Systems 2006

Adelinde M. Uhrmacher: Multi-Level Modeling and Simulation in Systems Biology -- Promises and Challenges. DS-RT 2006: 95

Roland Ewald, Jan Himmelspach, Adelinde M. Uhrmacher, Dan Chen, Georgios K. Theodoropoulos: A Simulation Approach to Facilitate Parallel and Distributed Discrete-Event Simulator Development. DS-RT 2006: 209-218

Martina Gierke, Jan Himmelspach, Mathias Röhl, Adelinde M. Uhrmacher: Modeling and Simulation of Tests for Agents. MATES 2006: 49-60

Roland Ewald, Dan Chen, Georgios K. Theodoropoulos, Michael Lees, Brian S. Logan, Ton Oguara, Adelinde Uhrmacher: Performance Analysis of Shared Data Access Algorithms for Distributed Simulation of Multi-Agent Systems. PADS 2006: 29-36

Jan Himmelspach, Paola Lecca, Davide Prandi, Corrado Priami, Paola Quaglia, Adelinde Uhrmacher: Developing An Hierarchical Simulator for Beta-binders. PADS 2006: 92-102

Adelinde M. Uhrmacher, Jan Himmelspach, Mathias Röhl, Roland Ewald: Introducing variable ports and multi-couplings for cell biological modeling in DEVS. Winter Simulation Conference 2006: 832-840

Roland Ewald, Jan Himmelspach, Adelinde M. Uhrmacher: A non-fragmenting partitioning algorithm for hierarchical models. Winter Simulation Conference 2006: 848-855

Mathias Röhl, Adelinde M. Uhrmacher: Composing simulations from XML-specified model components. Winter Simulation Conference 2006: 1083-1090

Herbert M. Sauro, David Harel, Marta Z. Kwiatkowska, Clifford A. Shaffer, Adelinde M. Uhrmacher, Michael Hucka, Pedro Mendes, Lena Strömbäck, John J. Tyson: Challenges for modeling and simulation methods in systems biology. Winter Simulation Conference 2006: 1720-1730

David M. Nicol, Corrado Priami, Hanne Riis Nielson, Adelinde M. Uhrmacher (Eds.): Simulation and Verification of Dynamic Systems, 17.04. - 22.04.2006. Dagstuhl Seminar Proceedings 06161, Internationales Begegnungs- und Forschungszentrum fuer Informatik (IBFI), Schloss Dagstuhl, Germany 2006

Adelinde Uhrmacher, Daniela Degenring, Bernard P. Zeigler: Discrete Event Multi-level Models for Systems Biology. T. Comp. Sys. Biology 1: 66-89 (2005)

Adelinde Uhrmacher, Corrado Priami: Discrete event systems specification in systems biology - a discussion of stochastic pi calculus and DEVS. Winter Simulation Conference 2005: 317-326

Mathias Röhl, Adelinde Uhrmacher: Flexible integration of XML into modeling and simulation systems. Winter Simulation Conference 2005: 1813-1820

Adelinde Uhrmacher, Daniela Degenring, Jens Lemcke, Mario Krahmer: Towards Reusing Model Components in Systems Biology. CMSB 2004: 192-206

Alke Martens, Adelinde Uhrmacher: A Formal Tutoring Process Model for Intelligent Tutoring Systems. ECAI 2004: 124-128

Mathias Röhl, Adelinde Uhrmacher: Controlled Experimentation with Agents - Models and Implementations. ESAW 2004: 292-304

Alke Martens, Adelinde Uhrmacher: Modeling of Tutoring Processes in Intelligent Tutoring Systems. KI 2004: 396-409

Jan Himmelspach, Adelinde Uhrmacher: Processing Dynamic PDEVS Models. MASCOTS 2004: 329-336

Jan Himmelspach, Adelinde Uhrmacher: A Component-Based Simulation Layer for JAMES. PADS 2004: 115-122

Kwang-Hyun Cho, Adelinde Uhrmacher, Olaf Wolkenhauer: Introduction to the Special Issue on Systems Biology and Simulation. Simulation 79(12): 673 (2003)

Daniela Degenring, Mathias Röhl, Adelinde Uhrmacher: Discrete Event Simulation for a Better Understanding of Metabolite Channeling - A System Theoretic Approach. CMSB 2003: 114-126

Jan Himmelspach, Mathias Röhl, Adelinde Uhrmacher: Next generation modeling III - agents: simulation for testing software agents - an exploration based on James. Winter Simulation Conference 2003: 799-807

Adelinde Uhrmacher, Mathias Röhl, Bernd G. Kullick: The Role Of Reflection In Simulating And Testing Agents: An Exploration Based On The Simulation System James. Applied Artificial Intelligence 16(9-10): 795-811 (2002)

Alke Martens, Adelinde Uhrmacher: Adapting Learner Evaluation by Plans. AH 2002: 539-542

Alke Martens, Adelinde Uhrmacher: Adaptive Tutoring Processes and Mental Plans. Intelligent Tutoring Systems 2002: 71-80

Adelinde Uhrmacher: Dynamic structures in modeling and simulation: a reflective approach. ACM Trans. Model. Comput. Simul. 11(2): 206-232 (2001)

Adelinde Uhrmacher, Bernd G. Kullick: Interacting multi-agent and simulation systems: an exploration into mole and james. Agents 2001: 122-123

Adelinde M. Uhrmacher, Petra Tyschler, Dirk Tyschler: Modeling and simulation of mobile agents. Future Generation Comp. Syst. 17(2): 107-118 (2000)

Adelinde Uhrmacher, K. Gugler: Distributed, parallel simulation of multiple, deliberative agents. PADS 2000: 101-108

Adelinde Uhrmacher, Bernd G. Kullick: "Plug and test": software agents in virtual environments. Winter Simulation Conference 2000: 1722-1729

Tuncer I. Ören, Susan K. Numrich, Adelinde Uhrmacher, Linda F. Wilson, Erol Gelenbe: Agent-directed simulation: challenges to meet defense and civilian requirements. Winter Simulation Conference 2000: 1757-1762

Alexander Seitz, Adelinde Uhrmacher, D. Damm: Case-based prediction in experimental medical studies. Artificial Intelligence in Medicine 15(3): 255-273 (1999)

Alexander Seitz, Adelinde Uhrmacher: The Treatment of Time in a Case-Based Analysis of Experimental Medical Studies. KI 1998: 213-223

Adelinde Uhrmacher: Reasoning about changing structure: a modeling concept for ecological systems. Applied Artificial Intelligence 9(2): 157-180 (1995)

Adelinde Uhrmacher: Object-Oriented and Agent-Oriented Simulation: Implications for Social Science Application. Social Science Microsimulation 1995: 432-447

Adelinde Uhrmacher: EMSY - Ein Modellierungskonzept für ökologische und biologische Systeme unter besonderer Berücksichtigung ihrer dynamischen Veränderung. DISKI 20, Infix Verlag, St. Augustin, Germany 1992, isbn 3-929037-20-3