Jaak Vilo

Liina Kamm, Dan Bogdanov, Sven Laur, Jaak Vilo: A new way to protect privacy in large-scale genome-wide association studies. Bioinformatics 29(7): 886-893 (2013)

Raivo Kolde, Sven Laur, Priit Adler, Jaak Vilo: Robust rank aggregation for gene list integration and meta-analysis. Bioinformatics 28(4): 573-580 (2012)

Anna Leontjeva, Konstantin Tretyakov, Jaak Vilo, Taavi Tamkivi: Fraud Detection: Methods of Analysis for Hypergraph Data. ASONAM 2012: 1060-1064

Jüri Reimand, Tambet Arak, Jaak Vilo: g: Profiler - a web server for functional interpretation of gene lists (2011 update). Nucleic Acids Research 39(Web-Server-Issue): 307-315 (2011)

Konstantin Tretyakov, Abel Armas-Cervantes, Luciano García-Bañuelos, Jaak Vilo, Marlon Dumas: Fast fully dynamic landmark-based estimation of shortest path distances in very large graphs. CIKM 2011: 1785-1794

Meelis Kull, Konstantin Tretyakov, Jaak Vilo: An Evolutionary Model of DNA Substring Distribution. Algorithms and Applications 2010: 147-157

Einar Meister, Jaak Vilo, Neeme Kahusk: National Programme for Estonian Language Technology: a Pre-final Summary. Baltic HLT 2010: 11-14

Siim Orasmaa, Reina Käärik, Jaak Vilo, Tiit Hennoste: Information Retrieval of Word Form Variants in Spoken Language Corpora Using Generalized Edit Distance. LREC 2010

Darya Krushevskaya, Hedi Peterson, Jüri Reimand, Meelis Kull, Jaak Vilo: VisHiC - hierarchical functional enrichment analysis of microarray data. Nucleic Acids Research 37(Web-Server-Issue): 587-592 (2009)

Meelis Kull, Jaak Vilo: Fast approximate hierarchical clustering using similarity heuristics. BioData Mining 1 (2008)

Priit Adler, Jüri Reimand, Jürgen Jänes, Raivo Kolde, Hedi Peterson, Jaak Vilo: KEGGanim: pathway animations for high-throughput data. Bioinformatics 24(4): 588-590 (2008)

Jüri Reimand, Laur Tooming, Hedi Peterson, Priit Adler, Jaak Vilo: GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. Nucleic Acids Research 36(Web-Server-Issue): 452-459 (2008)

Margus Jäger, Liina Kamm, Darja Krushevskaja, Harry-Anton Talvik, Janno Veldemann, Andres Vilgota, Jaak Vilo: Flexible Database Platform for Biomedical Research with Multiple User Interfaces and a Universal Query Engine. DB&IS 2008: 301-310

Einar Meister, Jaak Vilo: Strengthening the Estonian Language Technology. LREC 2008

Jüri Reimand, Meelis Kull, Hedi Peterson, Jaanus Hansen, Jaak Vilo: g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Research 35(Web-Server-Issue): 193-200 (2007)

Misha Kapushesky, Patrick Kemmeren, Aedín C. Culhane, Steffen Durinck, Jan Ihmels, Christine Körner, Meelis Kull, Aurora Torrente, Ugis Sarkans, Jaak Vilo, Alvis Brazma: Expression Profiler: next generation - an online platform for analysis of microarray data. Nucleic Acids Research 32(Web-Server-Issue): 465-470 (2004)

Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone: ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Research 31(1): 68-71 (2003)

Kimmo Palin, Esko Ukkonen, Alvis Brazma, Jaak Vilo: Correlating gene promoters and expression in gene disruption experiments. ECCB 2002: 172-180

Johan Rung, Thomas Schlitt, Alvis Brazma, K. Freivalds, Jaak Vilo: Building and analysing genome-wide gene disruption networks. ECCB 2002: 202-210

Steffen Möller, Jaak Vilo, Michael D. R. Croning: Prediction of the coupling specificity of G protein coupled receptors to their G proteins. ISMB (Supplement of Bioinformatics) 2001: 174-181

Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen: Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data. ISMB 2000: 384-394

Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen: Predicting gene regulatory elements from their expression data in the complete yeast genome. German Conference on Bioinformatics 1998

Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen: Pattern Discovery in Biosequences. ICGI 1998: 257-270

Alvis Brazma, Jaak Vilo, Esko Ukkonen: Finding transcription factor binding site combinations in the yeast genome. German Conference on Bioinformatics 1997: 57-59

Alvis Brazma, Jaak Vilo, Esko Ukkonen, Kimmo Valtonen: Data Mining for Regulatory Elements in Yeast Genome. ISMB 1997: 65-74

Alvis Brazma, Esko Ukkonen, Jaak Vilo: Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract). ISAAC 1996: 95-104

Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo: Discovering Patterns and Subfamilies in Biosequences. ISMB 1996: 34-43

Jyrki Kivinen, Heikki Mannila, Esko Ukkonen, Jaak Vilo: An ALgorithm for Learning Hierarchical Classifiers. ECML 1994: 375-378

Jaak Vilo: Implementing Attribute Grammars by Computational Models. PLILP 1992: 485-486